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(-) Description

Title :  THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TMP COMPLEX.
 
Authors :  W. Blankenfeldt, J. S. Lam, J. H. Naismith
Date :  26 Sep 00  (Deposition) - 27 Dec 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Rhamnose, Nucleotidyltransferase, Pyrophosphorylase, Thymidylyltransferase, Allostery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla).
Embo J. V. 19 6652 2000
PubMed-ID: 11118200  |  Reference-DOI: 10.1093/EMBOJ/19.24.6652
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.7.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA)

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 29)

Asymmetric Unit (2, 29)
No.NameCountTypeFull Name
1SO413Ligand/IonSULFATE ION
2TMP16Ligand/IonTHYMIDINE-5'-PHOSPHATE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
2TMP8Ligand/IonTHYMIDINE-5'-PHOSPHATE
Biological Unit 2 (2, 13)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
2TMP8Ligand/IonTHYMIDINE-5'-PHOSPHATE

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:128 , GLU A:215 , HOH A:9591 , HOH A:9892 , ASP F:151 , GLN F:152 , HOH F:9678 , HOH F:9874BINDING SITE FOR RESIDUE SO4 A 3700
02AC2SOFTWAREARG B:128 , GLU B:215 , HOH B:9568 , ASP E:151 , GLN E:152 , HOH E:9617 , HOH E:9790 , HOH E:9874BINDING SITE FOR RESIDUE SO4 E 4700
03AC3SOFTWAREGLN C:127 , ARG C:128 , GLN C:129 , THR C:130BINDING SITE FOR RESIDUE SO4 C 3800
04AC4SOFTWAREHOH B:9956 , ARG C:62 , ARG D:62 , HOH D:9632 , HOH D:9713 , HOH D:9757 , HOH D:9818BINDING SITE FOR RESIDUE SO4 D 3900
05AC5SOFTWAREASP C:151 , GLN C:152 , HOH C:9673 , HOH C:9814 , HOH C:9886 , ARG G:128 , GLU G:215 , HOH G:9679 , HOH G:9733BINDING SITE FOR RESIDUE SO4 C 4000
06AC6SOFTWAREGLN D:127 , ARG D:128 , GLN D:129 , THR D:130 , HOH D:9859BINDING SITE FOR RESIDUE SO4 D 4800
07AC7SOFTWAREARG B:245 , ARG D:144 , SER D:231 , HOH D:9564 , HOH D:9720 , HOH D:9728 , HOH D:9887BINDING SITE FOR RESIDUE SO4 D 5000
08AC8SOFTWAREASP D:151 , GLN D:152 , HOH D:9651 , ARG H:128 , GLU H:215 , HOH H:9633BINDING SITE FOR RESIDUE SO4 D 5100
09AC9SOFTWAREARG D:49 , HOH D:9634 , HOH D:9693 , ARG E:187 , HOH E:9666BINDING SITE FOR RESIDUE SO4 D 5200
10BC1SOFTWAREARG E:62 , GLN E:65 , HOH E:9813 , ARG F:62BINDING SITE FOR RESIDUE SO4 E 5700
11BC2SOFTWAREGLN E:127 , ARG E:128 , GLN E:129 , THR E:130 , HOH E:9850BINDING SITE FOR RESIDUE SO4 E 5800
12BC3SOFTWAREGLN F:129 , THR F:130BINDING SITE FOR RESIDUE SO4 F 6700
13BC4SOFTWAREARG G:62 , HOH G:9672 , HOH G:9770 , HOH G:9833 , HOH G:9857 , ARG H:62BINDING SITE FOR RESIDUE SO4 G 7700
14BC5SOFTWARELEU A:8 , GLY A:10 , GLY A:11 , LYS A:25 , GLN A:26 , GLN A:82 , PRO A:85 , ASP A:86 , GLY A:87 , LEU A:88 , GLY A:109 , ASP A:110 , ARG A:194 , GLU A:196 , HOH A:9651 , HOH A:9663 , HOH A:9852BINDING SITE FOR RESIDUE TMP A 8500
15BC6SOFTWARELEU B:8 , GLY B:10 , GLY B:11 , LYS B:25 , GLN B:26 , GLN B:82 , PRO B:85 , ASP B:86 , GLY B:87 , LEU B:88 , GLY B:109 , ASP B:110 , LYS B:162 , GLU B:196 , HOH B:9642 , HOH B:9667 , HOH B:9669 , HOH B:9702 , HOH B:9868BINDING SITE FOR RESIDUE TMP B 9500
16BC7SOFTWARELEU C:8 , GLY C:10 , GLY C:11 , LYS C:25 , GLN C:26 , GLN C:82 , PRO C:85 , ASP C:86 , GLY C:87 , LEU C:88 , GLY C:109 , ASP C:110 , GLU C:196 , HOH C:9622 , HOH C:9760BINDING SITE FOR RESIDUE TMP C 9501
17BC8SOFTWARELEU D:8 , GLY D:10 , GLY D:11 , LYS D:25 , GLN D:26 , GLN D:82 , PRO D:85 , ASP D:86 , GLY D:87 , LEU D:88 , GLY D:109 , ASP D:110 , GLU D:196 , HOH D:9644 , HOH D:9672 , HOH D:9698 , HOH D:9744 , HOH D:9781BINDING SITE FOR RESIDUE TMP D 9502
18BC9SOFTWARELEU E:8 , GLY E:10 , GLY E:11 , LYS E:25 , GLN E:26 , GLN E:82 , PRO E:85 , ASP E:86 , GLY E:87 , LEU E:88 , ASP E:110 , HOH E:9747 , HOH E:9752 , HOH E:9886BINDING SITE FOR RESIDUE TMP E 9503
19CC1SOFTWARELEU F:8 , GLY F:10 , LYS F:25 , GLN F:26 , GLN F:82 , PRO F:85 , ASP F:86 , GLY F:87 , LEU F:88 , ASP F:110 , GLU F:196 , HOH F:9623 , HOH F:9646 , HOH F:9649 , HOH F:9748BINDING SITE FOR RESIDUE TMP F 9504
20CC2SOFTWARELEU G:8 , GLY G:10 , GLY G:11 , LYS G:25 , GLN G:26 , GLN G:82 , PRO G:85 , ASP G:86 , GLY G:87 , LEU G:88 , GLY G:109 , ASP G:110 , GLU G:196 , HOH G:9601 , HOH G:9795 , HOH G:9807 , HOH G:9850 , HOH G:9882BINDING SITE FOR RESIDUE TMP G 9505
21CC3SOFTWARELEU H:8 , GLY H:10 , GLY H:11 , LYS H:25 , GLN H:26 , GLN H:82 , PRO H:85 , ASP H:86 , GLY H:87 , LEU H:88 , GLY H:109 , ASP H:110 , HOH H:9614 , HOH H:9673 , HOH H:9692 , HOH H:9768 , HOH H:9830 , HOH H:9861 , HOH H:9867 , HOH H:9882 , HOH H:9939BINDING SITE FOR RESIDUE TMP H 9506
22CC4SOFTWARELEU A:45 , TYR A:114 , GLY A:115 , HIS A:116 , ASP A:117 , VAL A:250 , ALA A:251 , GLU A:255 , ILE A:256 , ARG A:259 , HOH A:9520 , HOH A:9527 , HOH A:9530 , HOH A:9534 , HOH A:9535 , HOH A:9547 , HOH A:9947 , GLY C:218 , ARG C:219 , GLY C:220BINDING SITE FOR RESIDUE TMP A 9507
23CC5SOFTWARELEU B:45 , TYR B:114 , GLY B:115 , HIS B:116 , ASP B:117 , VAL B:250 , ALA B:251 , GLU B:255 , ILE B:256 , HOH B:9517 , HOH B:9521 , HOH B:9529 , HOH B:9536 , HOH B:9560 , HOH B:9693 , HOH B:9969 , HOH B:9970 , GLY D:218 , ARG D:219 , GLY D:220BINDING SITE FOR RESIDUE TMP B 9508
24CC6SOFTWAREGLY A:218 , ARG A:219 , GLY A:220 , LEU C:45 , TYR C:114 , GLY C:115 , HIS C:116 , ASP C:117 , VAL C:250 , ALA C:251 , GLU C:255 , ILE C:256 , ARG C:259 , HOH C:9522 , HOH C:9547 , HOH C:9548 , HOH C:9575 , HOH C:9630 , HOH C:9884 , HOH C:9891BINDING SITE FOR RESIDUE TMP C 9509
25CC7SOFTWAREGLY B:218 , ARG B:219 , GLY B:220 , LEU D:45 , TYR D:114 , GLY D:115 , HIS D:116 , ASP D:117 , VAL D:250 , ALA D:251 , GLU D:255 , ILE D:256 , ARG D:259 , HOH D:9526 , HOH D:9529 , HOH D:9537 , HOH D:9546 , HOH D:9548 , HOH D:9571 , HOH D:9874BINDING SITE FOR RESIDUE TMP D 9510
26CC8SOFTWARETYR E:114 , GLY E:115 , HIS E:116 , ASP E:117 , VAL E:250 , ALA E:251 , GLU E:255 , ILE E:256 , HOH E:9517 , HOH E:9524 , HOH E:9539 , HOH E:9554 , HOH E:9556 , HOH E:9591 , HOH E:9598 , GLY H:218 , ARG H:219 , GLY H:220BINDING SITE FOR RESIDUE TMP E 9511
27CC9SOFTWARELEU F:45 , TYR F:114 , GLY F:115 , HIS F:116 , ASP F:117 , VAL F:250 , ALA F:251 , GLU F:255 , ILE F:256 , HOH F:9514 , HOH F:9530 , HOH F:9531 , HOH F:9545 , HOH F:9568 , HOH F:9576 , HOH F:9602 , GLY G:218 , ARG G:219 , GLY G:220BINDING SITE FOR RESIDUE TMP F 9512
28DC1SOFTWAREGLY F:218 , ARG F:219 , GLY F:220 , TYR G:114 , GLY G:115 , HIS G:116 , ASP G:117 , VAL G:250 , ALA G:251 , GLU G:255 , ILE G:256 , HOH G:9518 , HOH G:9527 , HOH G:9538 , HOH G:9542 , HOH G:9546 , HOH G:9588 , HOH G:9600BINDING SITE FOR RESIDUE TMP G 9513
29DC2SOFTWAREGLY E:218 , ARG E:219 , GLY E:220 , LEU H:45 , TYR H:114 , GLY H:115 , HIS H:116 , ASP H:117 , VAL H:250 , ALA H:251 , GLU H:255 , ILE H:256 , HOH H:9523 , HOH H:9524 , HOH H:9527 , HOH H:9533 , HOH H:9537 , HOH H:9541 , HOH H:9552BINDING SITE FOR RESIDUE TMP H 9514

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FXO)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1His A:17 -Pro A:18
2His B:17 -Pro B:18
3His C:17 -Pro C:18
4His D:17 -Pro D:18
5His E:17 -Pro E:18
6His F:17 -Pro F:18
7His G:17 -Pro G:18
8His H:17 -Pro H:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FXO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FXO)

(-) Exons   (0, 0)

(no "Exon" information available for 1FXO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxoa_ A: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fxoA00 A:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhhhhhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo A   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain B from PDB  Type:PROTEIN  Length:293
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         Q9HU22_PSEAE     1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxob_ B: RmlA (RfbA)                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1fxoB00 B:1-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo B   1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   


Chain C from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxoc_ C: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fxoC00 C:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhh.......hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhhh........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo C   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain D from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxod_ D: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fxoD00 D:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhh.........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo D   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain E from PDB  Type:PROTEIN  Length:293
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         Q9HU22_PSEAE     1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxoe_ E: RmlA (RfbA)                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1fxoE00 E:1-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo E   1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   


Chain F from PDB  Type:PROTEIN  Length:293
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         Q9HU22_PSEAE     1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxof_ F: RmlA (RfbA)                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1fxoF00 F:1-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeeehhhhhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhh...eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo F   1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   


Chain G from PDB  Type:PROTEIN  Length:293
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   
         Q9HU22_PSEAE     1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxog_ G: RmlA (RfbA)                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1fxoG00 G:1-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhh....eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhhh........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo G   1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290   


Chain H from PDB  Type:PROTEIN  Length:292
 aligned with Q9HU22_PSEAE | Q9HU22 from UniProtKB/TrEMBL  Length:293

    Alignment length:292
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  
         Q9HU22_PSEAE     2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
               SCOP domains d1fxoh_ H: RmlA (RfbA)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fxoH00 H:2-293 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh..eeeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eee..eeee..hhhhhhhhh........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fxo H   2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATLENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTETVY 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FXO)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q9HU22_PSEAE | Q9HU22)
molecular function
    GO:0008879    glucose-1-phosphate thymidylyltransferase activity    Catalysis of the reaction: alpha-D-glucose 1-phosphate + dTTP = diphosphate + dTDP-glucose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0045226    extracellular polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.

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  1fxo
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  Q9HU22_PSEAE | Q9HU22
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  2.7.7.24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HU22_PSEAE | Q9HU22: 1fzw 1g0r 1g1l 1g23 1g2v 1g3l 3zlk 3zll 4arw 4asj 4asy 4b2w 4b2x 4b3u 4b42 4b4b 4b4g 4b4m 4b5b 5fts 5ftv 5fu0 5fu8 5fuh 5fye

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1FXO)