Chain A from PDB Type:PROTEIN Length:543
aligned with O62547_DORPE | O62547 from UniProtKB/TrEMBL Length:591
Alignment length:590
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 511 521 531 541 551 561 571 581 591
O62547_DORPE 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP 591
SCOP domains d1fvfa_ A: Neuronal Sec1, NSec1 SCOP domains
CATH domains 1fvfA02 A:2-129 [code=3.40.50.2060, no name defined] --1fvfA01 A:132-242,A:482-588 [code=3.40.50.1910, no name defined] 1fvfA03 A:243-356 Synt axin Binding Protein 1; Chain A, domain 2 -1fvfA04 A:358-481 [code=1.25.40.60, no name defined] 1fvfA01 A:132-242,A:482-588 [code=3.40.50.1910, no name defined] --- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhh..eeeeee...........eeeeee..hhhhhhhhhhhh..........eeeee....hhhhhhhhhhhhhhh.eeeeee.....eeee..eee....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhh.............eeeeee.hhh.........hhhhhhhhhh.hhh.eee..--------..eee....hhhhhhhh.....hhhhhhhhhhhhhhh...------------.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh................hhhhh...............hhhhhhhhhhhh...............---------------------------..eeeeeee...hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1fvf A 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYV--------EKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKR------------LSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGG---------------------------GPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP 591
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 | - | 281 291 301 311| - | 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 | - - - | 541 551 561 571 581 591
264 273 312 325 508 536
Chain B from PDB Type:PROTEIN Length:543
aligned with O62547_DORPE | O62547 from UniProtKB/TrEMBL Length:591
Alignment length:590
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 511 521 531 541 551 561 571 581 591
O62547_DORPE 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP 591
SCOP domains d1fvfb_ B: Neuronal Sec1, NSec1 SCOP domains
CATH domains 1fvfB02 B:2-129 [code=3.40.50.2060, no name defined] --1fvfB01 B:132-242,B:482-588 [code=3.40.50.1910, no name defined] 1fvfB03 B:243-356 Synt axin Binding Protein 1; Chain A, domain 2 -1fvfB04 B:358-481 [code=1.25.40.60, no name defined] 1fvfB01 B:132-242,B:482-588 [code=3.40.50.1910, no name defined] --- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhh..eeeeee...........eeeeee..hhhhhhhhhhhh..........eeeee....hhhhhhhhhhhhhhh.eeeeee...........eee....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhh.............eeeeee.hhh.........hhhhhhhhhh.hhh.eee..--------..eee....hhhhhhhh.....hhhhhhhhhhhhhhh...------------.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh................hhhhh...............hhhhhhhhhhhh...............---------------------------..eeeeeee...hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1fvf B 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYV--------EKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKR------------LSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGG---------------------------GPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP 591
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 | - | 281 291 301 311| - | 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 | - - - | 541 551 561 571 581 591
264 273 312 325 508 536
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |