Asymmetric/Biological Unit
Chain A from PDB Type:PROTEIN Length:546
aligned with O62547_DORPE | O62547 from UniProtKB/TrEMBL Length:591
Alignment length:590
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 511 521 531 541 551 561 571 581 591
O62547_DORPE 2 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP 591
SCOP domains d1epua_ A: Neuronal Sec1, NSec1 SCOP domains
CATH domains 1epuA01 A:2-129 [code=3.40.50.2060, no name defined] --1epuA04 A:132-242,A:482-569 [code=3.40.50.1910, no name defined] 1epuA02 A:243-357 Syn taxin Binding Protein 1; Chain A, doma in 2 1epuA03 A:358-481 [code=1.25.40.60, no name defined] 1epuA04 A:132-242,A:482-569 [code=3.40.50.1910, no name define---------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhh..eeeeee.......eeeeeeeeee..hhhhhhhhhhhh.......eeeeeeee....hhhhhhhhhhh.hhh.eeeeee.....eeee..eee...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhh.....hhhhhh..eeeeee.hhh.hhhhh...hhhhhhhhhh.....ee..-----------.ee.hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.--------....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh................hhhhh........hhhhh..hhhhhhhhhhhh...............-------------------------....eeeeeee...hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1epu A 2 ALKTAVHEKImNDVVLAVKKNAEWKVLIVDQLSmRmVSACCKmHEImSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLmADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTmGEGPQKDRSQLLILDRGFDPISPLLHELTFQAmAYDLLPIENDVYKY-----------EVLLDEKDDLWVEmRHQHIAVVSQNVTKKLKQFADEKR--------GIKDLSQmLKKmPQYQKELSKYSTHLHLAEDCmKQYQQHVDKLCKVEQDLAmGTDADGEKIRDHmRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDmQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQmSRWTPYmKDImEAAVEDKLDTRHYPFLNGGG-------------------------KSGPRLIIFVVGGISYSEmRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP 591
11| 21 31 | | 41 | | 51 61 71 81 | 91 101 111 121 131 141 151 161 171 181 191 201 211 | 221 231 241 251 261 | - | 281 |291 301 311| 321 |331| 341 351 | 361 371| 381 | 391 401 411 421 431 441 451 461 471 | 481 | |491 501 | - - - | 541 551| 561 571 581 591
12-MSE 35-MSE 44-MSE 85-MSE 216-MSE 249-MSE 263 275 288-MSE 312 321 | | 353-MSE 372-MSE 385-MSE 441-MSE 477-MSE | | 508 534 552-MSE
37-MSE 48-MSE 328-MSE 484-MSE
332-MSE 488-MSE
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
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