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(-) Description

Title :  CRYSTAL STRUCTURE OF R-PHYCOCYANIN FROM POLYSIPHONIA AT 2.4 A RESOLUTION
 
Authors :  D. C. Liang, T. Jiang, W. R. Chang
Date :  09 Jul 00  (Deposition) - 09 Jul 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,K,L,M,N
Biol. Unit 1:  A,B,K,L,M,N  (2x)
Keywords :  Light Harvesting Protein, R-Phycocyanin, Photosynthesis, Electron Trasnport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Jiang, J. P. Zhang, W. R. Chang, D. C. Liang
Crystal Structure Of R-Phycocyanin And Possible Energy Transfer Pathways In The Phycobilisome.
Biophys. J. V. 81 1171 2001
PubMed-ID: 11463658

(-) Compounds

Molecule 1 - R-PHYCOCYANIN
    ChainsA, K, M
    Organism ScientificPOLYSIPHONIA URCEOLATA
    Organism Taxid65404
    Other DetailsALPHA CHAIN
 
Molecule 2 - R-PHYCOCYANIN
    ChainsB, L, N
    Organism ScientificPOLYSIPHONIA URCEOLATA
    Organism Taxid65404
    Other DetailsBETA CHAIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABKLMN
Biological Unit 1 (2x)ABKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1BLA1Ligand/IonBILIVERDINE IX ALPHA
2CYC5Ligand/IonPHYCOCYANOBILIN
3PEB3Ligand/IonPHYCOERYTHROBILIN
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1BLA2Ligand/IonBILIVERDINE IX ALPHA
2CYC10Ligand/IonPHYCOCYANOBILIN
3PEB6Ligand/IonPHYCOERYTHROBILIN

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:59 , THR A:66 , PRO A:72 , ASN A:73 , TYR A:74 , SER A:75 , GLY A:80 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , MET A:94 , TYR A:110 , ILE A:118 , PHE A:122 , TRP A:128 , TYR A:129 , HOH A:386 , HOH A:398 , HOH A:415 , ARG L:57 , ILE L:67 , THR L:75 , SER L:76 , HOH L:425BINDING SITE FOR RESIDUE BLA A 384
2AC2SOFTWAREASN B:72 , ARG B:77 , ARG B:78 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , SER B:126BINDING SITE FOR RESIDUE CYC B 385
3AC3SOFTWAREGLN A:25 , ASN A:28 , ARG A:33 , ASP A:145 , ASN B:35 , LYS B:36 , ASP B:39 , VAL B:40 , VAL B:142 , ASN B:143 , PRO B:149 , ALA B:150 , GLY B:151 , CYS B:153BINDING SITE FOR RESIDUE PEB B 355
4AC4SOFTWAREVAL K:59 , THR K:66 , PRO K:72 , ASN K:73 , TYR K:74 , SER K:75 , GLY K:80 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , TRP K:128 , TYR K:129 , HOH K:392 , ARG N:57 , THR N:75BINDING SITE FOR RESIDUE CYC K 386
5AC5SOFTWAREASN L:72 , ALA L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , CYS L:109 , LEU L:113 , SER L:126BINDING SITE FOR RESIDUE CYC L 387
6AC6SOFTWARELEU K:24 , GLN K:25 , ASN K:28 , ASN L:35 , LYS L:36 , ASP L:39 , VAL L:40 , VAL L:142 , ASN L:143 , ASP L:144 , THR L:148 , PRO L:149 , ALA L:150 , GLY L:151 , CYS L:153 , ASP M:145 , ASN M:148BINDING SITE FOR RESIDUE PEB L 356
7AC7SOFTWAREARG B:57 , ILE B:67 , THR B:75 , VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , SER M:75 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:110 , PHE M:122 , TRP M:128 , TYR M:129 , HOH M:395BINDING SITE FOR RESIDUE CYC M 388
8AC8SOFTWAREASN N:72 , ARG N:77 , ARG N:78 , CYS N:82 , ARG N:84 , ASP N:85 , ILE N:88 , ARG N:108 , LEU N:113 , LEU N:120 , THR N:122 , SER N:126 , HOH N:447 , HOH N:450BINDING SITE FOR RESIDUE CYC N 389
9AC9SOFTWAREASP K:145 , ASN K:148 , ASN M:28 , ASN N:35 , LYS N:36 , LEU N:38 , ASP N:39 , VAL N:40 , VAL N:142 , ASN N:143 , ASP N:144 , THR N:145 , PRO N:149 , ALA N:150 , GLY N:151 , CYS N:153BINDING SITE FOR RESIDUE PEB N 357

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1F99)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1F99)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1F99)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1F99)

(-) Exons   (0, 0)

(no "Exon" information available for 1F99)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with PHCA_POLUR | P59858 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
           PHCA_POLUR     1 MKTPLTEAIAAADSQGRFLSNTELQVVNGRYNRATSSLEAAKALTANADRLISGAANAVYSKFPYTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVVGGTGPMDDYLVAGLEEINRTFELSPSWYIEALKYIKNNHGLSGDVANEANTYIDYAINTLS 162
               SCOP domains d1f99a_ A: Phycocyanin alpha subunit                                                                                                                               SCOP domains
               CATH domains 1f99A00 A:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f99 A   1 MKTPLTEAIAAADSQGRFLSNTELQVVNGRYNRATSSLEAAKALTANADRLISGAANAVYSKFPYTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVVGGTGPMDDYLVAGLEEINRTFELSPSWYIEALKYIKNNHGLSGDVANEANTYIDYAINTLS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  

Chain B from PDB  Type:PROTEIN  Length:172
 aligned with PHCB_POLUR | P59859 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
           PHCB_POLUR     1 MLDAFAKVVAQADARGEFLSNTQIDALLAIVSEGNKRLDVVNKITNNASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDASVLDDRCLNGLRETYQALGTPGASVAVAIQKMKDAALALVNDTTGTPAGDCASLVAEIATYFDRAAAAVA 172
               SCOP domains d1f99b_ B: Phycocyanin beta subunit                                                                                                                                          SCOP domains
               CATH domains 1f99B00 B:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f99 B   1 MLDAFAKVVAQADARGEFLSNTQIDALLAIVSEGNKRLDVVNKITNNASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDASVLDDRCLNGLRETYQALGTPGASVAVAIQKMKDAALALVNDTTGTPAGDCASLVAEIATYFDRAAAAVA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  

Chain K from PDB  Type:PROTEIN  Length:162
 aligned with PHCA_POLUR | P59858 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
           PHCA_POLUR     1 MKTPLTEAIAAADSQGRFLSNTELQVVNGRYNRATSSLEAAKALTANADRLISGAANAVYSKFPYTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVVGGTGPMDDYLVAGLEEINRTFELSPSWYIEALKYIKNNHGLSGDVANEANTYIDYAINTLS 162
               SCOP domains d1f99k_ K: Phycocyanin alpha subunit                                                                                                                               SCOP domains
               CATH domains 1f99K00 K:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f99 K   1 MKTPLTEAIAAADSQGRFLSNTELQVVNGRYNRATSSLEAAKALTANADRLISGAANAVYSKFPYTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVVGGTGPMDDYLVAGLEEINRTFELSPSWYIEALKYIKNNHGLSGDVANEANTYIDYAINTLS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  

Chain L from PDB  Type:PROTEIN  Length:172
 aligned with PHCB_POLUR | P59859 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
           PHCB_POLUR     1 MLDAFAKVVAQADARGEFLSNTQIDALLAIVSEGNKRLDVVNKITNNASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDASVLDDRCLNGLRETYQALGTPGASVAVAIQKMKDAALALVNDTTGTPAGDCASLVAEIATYFDRAAAAVA 172
               SCOP domains d1f99l_ L: Phycocyanin beta subunit                                                                                                                                          SCOP domains
               CATH domains 1f99L00 L:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f99 L   1 MLDAFAKVVAQADARGEFLSNTQIDALLAIVSEGNKRLDVVNKITNNASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDASVLDDRCLNGLRETYQALGTPGASVAVAIQKMKDAALALVNDTTGTPAGDCASLVAEIATYFDRAAAAVA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  

Chain M from PDB  Type:PROTEIN  Length:162
 aligned with PHCA_POLUR | P59858 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
           PHCA_POLUR     1 MKTPLTEAIAAADSQGRFLSNTELQVVNGRYNRATSSLEAAKALTANADRLISGAANAVYSKFPYTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVVGGTGPMDDYLVAGLEEINRTFELSPSWYIEALKYIKNNHGLSGDVANEANTYIDYAINTLS 162
               SCOP domains d1f99m_ M: Phycocyanin alpha subunit                                                                                                                               SCOP domains
               CATH domains 1f99M00 M:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f99 M   1 MKTPLTEAIAAADSQGRFLSNTELQVVNGRYNRATSSLEAAKALTANADRLISGAANAVYSKFPYTTQMPGPNYSSTAIGKAKCARDIGYYLRMVTYCLVVGGTGPMDDYLVAGLEEINRTFELSPSWYIEALKYIKNNHGLSGDVANEANTYIDYAINTLS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  

Chain N from PDB  Type:PROTEIN  Length:172
 aligned with PHCB_POLUR | P59859 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
           PHCB_POLUR     1 MLDAFAKVVAQADARGEFLSNTQIDALLAIVSEGNKRLDVVNKITNNASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDASVLDDRCLNGLRETYQALGTPGASVAVAIQKMKDAALALVNDTTGTPAGDCASLVAEIATYFDRAAAAVA 172
               SCOP domains d1f99n_ N: Phycocyanin beta subunit                                                                                                                                          SCOP domains
               CATH domains 1f99N00 N:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f99 N   1 MLDAFAKVVAQADARGEFLSNTQIDALLAIVSEGNKRLDVVNKITNNASAIVTNAARALFAEQPQLISPGGNAYTSRRMAACLRDMEIVLRYVSYAMIAGDASVLDDRCLNGLRETYQALGTPGASVAVAIQKMKDAALALVNDTTGTPAGDCASLVAEIATYFDRAAAAVA 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1F99)

(-) Gene Ontology  (9, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,K,M   (PHCA_POLUR | P59858)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

Chain B,L,N   (PHCB_POLUR | P59859)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

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