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1F99
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (330 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF R-PHYCOCYANIN FROM POLYSIPHONIA AT 2.4 A RESOLUTION
Authors
:
D. C. Liang, T. Jiang, W. R. Chang
Date
:
09 Jul 00 (Deposition) - 09 Jul 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,K,L,M,N
Biol. Unit 1: A,B,K,L,M,N (2x)
Keywords
:
Light Harvesting Protein, R-Phycocyanin, Photosynthesis, Electron Trasnport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jiang, J. P. Zhang, W. R. Chang, D. C. Liang
Crystal Structure Of R-Phycocyanin And Possible Energy Transfer Pathways In The Phycobilisome.
Biophys. J. V. 81 1171 2001
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
2a: PHYCOCYANOBILIN (CYCa)
2b: PHYCOCYANOBILIN (CYCb)
2c: PHYCOCYANOBILIN (CYCc)
2d: PHYCOCYANOBILIN (CYCd)
2e: PHYCOCYANOBILIN (CYCe)
3a: PHYCOERYTHROBILIN (PEBa)
3b: PHYCOERYTHROBILIN (PEBb)
3c: PHYCOERYTHROBILIN (PEBc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
1
Ligand/Ion
BILIVERDINE IX ALPHA
2
CYC
5
Ligand/Ion
PHYCOCYANOBILIN
3
PEB
3
Ligand/Ion
PHYCOERYTHROBILIN
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:59 , THR A:66 , PRO A:72 , ASN A:73 , TYR A:74 , SER A:75 , GLY A:80 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , MET A:94 , TYR A:110 , ILE A:118 , PHE A:122 , TRP A:128 , TYR A:129 , HOH A:386 , HOH A:398 , HOH A:415 , ARG L:57 , ILE L:67 , THR L:75 , SER L:76 , HOH L:425
BINDING SITE FOR RESIDUE BLA A 384
2
AC2
SOFTWARE
ASN B:72 , ARG B:77 , ARG B:78 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , SER B:126
BINDING SITE FOR RESIDUE CYC B 385
3
AC3
SOFTWARE
GLN A:25 , ASN A:28 , ARG A:33 , ASP A:145 , ASN B:35 , LYS B:36 , ASP B:39 , VAL B:40 , VAL B:142 , ASN B:143 , PRO B:149 , ALA B:150 , GLY B:151 , CYS B:153
BINDING SITE FOR RESIDUE PEB B 355
4
AC4
SOFTWARE
VAL K:59 , THR K:66 , PRO K:72 , ASN K:73 , TYR K:74 , SER K:75 , GLY K:80 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , TRP K:128 , TYR K:129 , HOH K:392 , ARG N:57 , THR N:75
BINDING SITE FOR RESIDUE CYC K 386
5
AC5
SOFTWARE
ASN L:72 , ALA L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , CYS L:109 , LEU L:113 , SER L:126
BINDING SITE FOR RESIDUE CYC L 387
6
AC6
SOFTWARE
LEU K:24 , GLN K:25 , ASN K:28 , ASN L:35 , LYS L:36 , ASP L:39 , VAL L:40 , VAL L:142 , ASN L:143 , ASP L:144 , THR L:148 , PRO L:149 , ALA L:150 , GLY L:151 , CYS L:153 , ASP M:145 , ASN M:148
BINDING SITE FOR RESIDUE PEB L 356
7
AC7
SOFTWARE
ARG B:57 , ILE B:67 , THR B:75 , VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , SER M:75 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:110 , PHE M:122 , TRP M:128 , TYR M:129 , HOH M:395
BINDING SITE FOR RESIDUE CYC M 388
8
AC8
SOFTWARE
ASN N:72 , ARG N:77 , ARG N:78 , CYS N:82 , ARG N:84 , ASP N:85 , ILE N:88 , ARG N:108 , LEU N:113 , LEU N:120 , THR N:122 , SER N:126 , HOH N:447 , HOH N:450
BINDING SITE FOR RESIDUE CYC N 389
9
AC9
SOFTWARE
ASP K:145 , ASN K:148 , ASN M:28 , ASN N:35 , LYS N:36 , LEU N:38 , ASP N:39 , VAL N:40 , VAL N:142 , ASN N:143 , ASP N:144 , THR N:145 , PRO N:149 , ALA N:150 , GLY N:151 , CYS N:153
BINDING SITE FOR RESIDUE PEB N 357
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1f99a_ (A:)
1b: SCOP_d1f99k_ (K:)
1c: SCOP_d1f99m_ (M:)
2a: SCOP_d1f99b_ (B:)
2b: SCOP_d1f99l_ (L:)
2c: SCOP_d1f99n_ (N:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
Phycocyanin alpha subunit
(16)
Red alga (Polysiphonia urceolata) [TaxId: 65404]
(1)
1a
d1f99a_
A:
1b
d1f99k_
K:
1c
d1f99m_
M:
Protein domain
:
Phycocyanin beta subunit
(15)
Red alga (Polysiphonia urceolata) [TaxId: 65404]
(1)
2a
d1f99b_
B:
2b
d1f99l_
L:
2c
d1f99n_
N:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1f99B00 (B:1-172)
1b: CATH_1f99L00 (L:1-172)
1c: CATH_1f99N00 (N:1-172)
1d: CATH_1f99A00 (A:1-162)
1e: CATH_1f99K00 (K:1-162)
1f: CATH_1f99M00 (M:1-162)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Polysiphonia urceolata. Organism_taxid: 65404.
(2)
1a
1f99B00
B:1-172
1b
1f99L00
L:1-172
1c
1f99N00
N:1-172
1d
1f99A00
A:1-162
1e
1f99K00
K:1-162
1f
1f99M00
M:1-162
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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