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1F99
Biol. Unit 1
Info
Asym.Unit (174 KB)
Biol.Unit 1 (330 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF R-PHYCOCYANIN FROM POLYSIPHONIA AT 2.4 A RESOLUTION
Authors
:
D. C. Liang, T. Jiang, W. R. Chang
Date
:
09 Jul 00 (Deposition) - 09 Jul 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,K,L,M,N
Biol. Unit 1: A,B,K,L,M,N (2x)
Keywords
:
Light Harvesting Protein, R-Phycocyanin, Photosynthesis, Electron Trasnport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jiang, J. P. Zhang, W. R. Chang, D. C. Liang
Crystal Structure Of R-Phycocyanin And Possible Energy Transfer Pathways In The Phycobilisome.
Biophys. J. V. 81 1171 2001
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
2a: PHYCOCYANOBILIN (CYCa)
2b: PHYCOCYANOBILIN (CYCb)
2c: PHYCOCYANOBILIN (CYCc)
2d: PHYCOCYANOBILIN (CYCd)
2e: PHYCOCYANOBILIN (CYCe)
3a: PHYCOERYTHROBILIN (PEBa)
3b: PHYCOERYTHROBILIN (PEBb)
3c: PHYCOERYTHROBILIN (PEBc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
2
Ligand/Ion
BILIVERDINE IX ALPHA
2
CYC
10
Ligand/Ion
PHYCOCYANOBILIN
3
PEB
6
Ligand/Ion
PHYCOERYTHROBILIN
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:59 , THR A:66 , PRO A:72 , ASN A:73 , TYR A:74 , SER A:75 , GLY A:80 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , MET A:94 , TYR A:110 , ILE A:118 , PHE A:122 , TRP A:128 , TYR A:129 , HOH A:386 , HOH A:398 , HOH A:415 , ARG L:57 , ILE L:67 , THR L:75 , SER L:76 , HOH L:425
BINDING SITE FOR RESIDUE BLA A 384
2
AC2
SOFTWARE
ASN B:72 , ARG B:77 , ARG B:78 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , SER B:126
BINDING SITE FOR RESIDUE CYC B 385
3
AC3
SOFTWARE
GLN A:25 , ASN A:28 , ARG A:33 , ASP A:145 , ASN B:35 , LYS B:36 , ASP B:39 , VAL B:40 , VAL B:142 , ASN B:143 , PRO B:149 , ALA B:150 , GLY B:151 , CYS B:153
BINDING SITE FOR RESIDUE PEB B 355
4
AC4
SOFTWARE
VAL K:59 , THR K:66 , PRO K:72 , ASN K:73 , TYR K:74 , SER K:75 , GLY K:80 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , TRP K:128 , TYR K:129 , HOH K:392 , ARG N:57 , THR N:75
BINDING SITE FOR RESIDUE CYC K 386
5
AC5
SOFTWARE
ASN L:72 , ALA L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , CYS L:109 , LEU L:113 , SER L:126
BINDING SITE FOR RESIDUE CYC L 387
6
AC6
SOFTWARE
LEU K:24 , GLN K:25 , ASN K:28 , ASN L:35 , LYS L:36 , ASP L:39 , VAL L:40 , VAL L:142 , ASN L:143 , ASP L:144 , THR L:148 , PRO L:149 , ALA L:150 , GLY L:151 , CYS L:153 , ASP M:145 , ASN M:148
BINDING SITE FOR RESIDUE PEB L 356
7
AC7
SOFTWARE
ARG B:57 , ILE B:67 , THR B:75 , VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , SER M:75 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:110 , PHE M:122 , TRP M:128 , TYR M:129 , HOH M:395
BINDING SITE FOR RESIDUE CYC M 388
8
AC8
SOFTWARE
ASN N:72 , ARG N:77 , ARG N:78 , CYS N:82 , ARG N:84 , ASP N:85 , ILE N:88 , ARG N:108 , LEU N:113 , LEU N:120 , THR N:122 , SER N:126 , HOH N:447 , HOH N:450
BINDING SITE FOR RESIDUE CYC N 389
9
AC9
SOFTWARE
ASP K:145 , ASN K:148 , ASN M:28 , ASN N:35 , LYS N:36 , LEU N:38 , ASP N:39 , VAL N:40 , VAL N:142 , ASN N:143 , ASP N:144 , THR N:145 , PRO N:149 , ALA N:150 , GLY N:151 , CYS N:153
BINDING SITE FOR RESIDUE PEB N 357
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1f99a_ (A:)
1b: SCOP_d1f99k_ (K:)
1c: SCOP_d1f99m_ (M:)
2a: SCOP_d1f99b_ (B:)
2b: SCOP_d1f99l_ (L:)
2c: SCOP_d1f99n_ (N:)
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(
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
Phycocyanin alpha subunit
(16)
Red alga (Polysiphonia urceolata) [TaxId: 65404]
(1)
1a
d1f99a_
A:
1b
d1f99k_
K:
1c
d1f99m_
M:
Protein domain
:
Phycocyanin beta subunit
(15)
Red alga (Polysiphonia urceolata) [TaxId: 65404]
(1)
2a
d1f99b_
B:
2b
d1f99l_
L:
2c
d1f99n_
N:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1f99B00 (B:1-172)
1b: CATH_1f99L00 (L:1-172)
1c: CATH_1f99N00 (N:1-172)
1d: CATH_1f99A00 (A:1-162)
1e: CATH_1f99K00 (K:1-162)
1f: CATH_1f99M00 (M:1-162)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Polysiphonia urceolata. Organism_taxid: 65404.
(2)
1a
1f99B00
B:1-172
1b
1f99L00
L:1-172
1c
1f99N00
N:1-172
1d
1f99A00
A:1-162
1e
1f99K00
K:1-162
1f
1f99M00
M:1-162
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Pfam Domains
(0, 0)
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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