1EKY - JenaLib

Title :   MODEL STRUCTURE FROM NON-NOE BASED NMR STRUCTURE CALCULATION

Authors :   J. C. Hus, D. Marion, M. Blackledge

Date :   10 Mar 00 (Deposition) - 17 Mar 00 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (32x)

Keywords :   Four Helix Bundle, Oxygen Storage/Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. C. Hus, D. Marion, M. Blackledge
De Novo Determination Of Protein Structure By Nmr Using Orientational And Long-Range Order Restraints.
J. Mol. Biol. V. 298 927 2000
PubMed-ID: 10801359 | Reference-DOI: 10.1006/JMBI.2000.3714
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 8)

NMR Structure (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_CYCP_RHOCA_001 *	K	19	G	CYCP_RHOCA	---	---	A	G	19	G
2	UniProt	VAR_CYCP_RHOCA_002 *	S	30	A	CYCP_RHOCA	---	---	A	A	30	A
3	UniProt	VAR_CYCP_RHOCA_003 *	A	38	V	CYCP_RHOCA	---	---	A	V	38	V
4	UniProt	VAR_CYCP_RHOCA_004 *	A	42	K	CYCP_RHOCA	---	---	A	K	42	K
5	UniProt	VAR_CYCP_RHOCA_005 *	T	76	A	CYCP_RHOCA	---	---	A	A	76	A
6	UniProt	VAR_CYCP_RHOCA_006 *	A	79	D	CYCP_RHOCA	---	---	A	D	79	D
7	UniProt	VAR_CYCP_RHOCA_007 *	N	89	H	CYCP_RHOCA	---	---	A	H	89	H
8	UniProt	VAR_CYCP_RHOCA_008 *	D	90	E	CYCP_RHOCA	---	---	A	E	90	E
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:129
 aligned with CYCP_RHOCA | P00147 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
           CYCP_RHOCA     1 ADTKEVLEAREAYFKSLGKSMKAMTGVAKSFDAEAAKAEAAALEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWTNMADFGAKGKAMNDAGAEVIAAANAGDATAFGAALQKLGGTCKACHDDYREED 129
               SCOP domains d1ekya_ A: Cytochrome c'                                                                                                          SCOP domains
               CATH domains 1ekyA00 A:1-129  [code=1.20.120.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------G----------A-------V---K---------------------------------A--D---------HE--------------------------------------- SAPs(SNPs)
                    PROSITE ----CYTCII  PDB: A:5-127 UniProt: 5-127                                                                                        -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1eky A   1 ADTKEVLEAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYREED 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

NMR Structure(hide GO term definitions)

Chain A (CYCP_RHOCA | P00147)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0022900	electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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