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(-) Description

Title :  CYTOCHROME C' FROM RHODOPSEUDOMONAS CAPSULATA
 
Authors :  T. H. Tahirov, S. Misaki, T. E. Meyer, M. A. Cusanovich, Y. Higuchi, N. Yasuoka
Date :  14 Aug 95  (Deposition) - 07 Dec 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A
Keywords :  Electron Transport, Cytochrome (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. H. Tahirov, S. Misaki, T. E. Meyer, M. A. Cusanovich, Y. Higuchi, N. Yasuoka
High-Resolution Crystal Structures Of Two Polymorphs Of Cytochrome C' From The Purple Phototrophic Bacterium Rhodobacter Capsulatus.
J. Mol. Biol. V. 259 467 1996
PubMed-ID: 8676382  |  Reference-DOI: 10.1006/JMBI.1996.0333
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME C'
    ChainsA
    Organism ScientificRHODOBACTER CAPSULATUS
    Organism Taxid1061
    Other DetailsSTRAIN M110 WAS DERIVED FROM THE WILD TYPE GENETIC STRAIN ST. LOUIS. STRAIN M110 DIFFERS FROM STRAIN SP7 IN 12 RESIDUES.
    StrainM110

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:10 , GLU A:11 , PHE A:14 , LYS A:15 , THR A:68 , GLU A:69 , ILE A:74 , PHE A:81 , GLY A:85 , THR A:117 , CYS A:118 , CYS A:121 , HIS A:122 , ARG A:126 , HOH A:143BINDING SITE FOR RESIDUE HEM A 130

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CPQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CPQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (8, 8)

Asymmetric/Biological Unit (8, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_CYCP_RHOCA_001 *K19GCYCP_RHOCA  ---  ---AG19G
2UniProtVAR_CYCP_RHOCA_002 *S30ACYCP_RHOCA  ---  ---AA30A
3UniProtVAR_CYCP_RHOCA_003 *A38VCYCP_RHOCA  ---  ---AV38V
4UniProtVAR_CYCP_RHOCA_004 *A42KCYCP_RHOCA  ---  ---AK42K
5UniProtVAR_CYCP_RHOCA_005 *T76ACYCP_RHOCA  ---  ---AA76A
6UniProtVAR_CYCP_RHOCA_006 *A79DCYCP_RHOCA  ---  ---AD79D
7UniProtVAR_CYCP_RHOCA_007 *N89HCYCP_RHOCA  ---  ---AH89H
8UniProtVAR_CYCP_RHOCA_008 *D90ECYCP_RHOCA  ---  ---AE90E
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCIIPS51009 Cytochrome c class II profile.CYCP_RHOCA5-127  1A:5-127

(-) Exons   (0, 0)

(no "Exon" information available for 1CPQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with CYCP_RHOCA | P00147 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
           CYCP_RHOCA     1 ADTKEVLEAREAYFKSLGKSMKAMTGVAKSFDAEAAKAEAAALEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWTNMADFGAKGKAMNDAGAEVIAAANAGDATAFGAALQKLGGTCKACHDDYREED 129
               SCOP domains d1cpqa_ A: Cytochrome c'                                                                                                          SCOP domains
               CATH domains 1cpqA00 A:1-129  [code=1.20.120.10, no name defined]                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..........................hhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------G----------A-------V---K---------------------------------A--D---------HE--------------------------------------- SAPs(SNPs)
                    PROSITE ----CYTCII  PDB: A:5-127 UniProt: 5-127                                                                                        -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cpq A   1 ADTKEVLEAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGTCKACHDDYREED 129
                                    10        20        30        40        50        60        70        80        90       100       110       120         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CPQ)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CYCP_RHOCA | P00147)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYCP_RHOCA | P001471cpr 1eky 1nbb 1rcp

(-) Related Entries Specified in the PDB File

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