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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CATALYTIC DOMAIN OF PROMMP-2 E404Q MUTANT

Authors :   U. Bergmann, A. Tuuttila, K. Tryggvason, E. Morgunova

Date :   12 Jul 01 (Deposition) - 22 Aug 02 (Release) - 21 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.66

Chains :   Asym. Unit : A,B,C,D,P,R
Biol. Unit 1: A,C,P  (1x)
Biol. Unit 2: B,D,R  (1x)

Keywords :   Hydrolase-Hydrolase Inhibitor Complex, Hydrolyse, Matrix Metalloproteinase, Gelatinase A, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   U. Bergmann, A. Tuuttila, E. Morgunova, K. Tryggvason
Crystal Structure Of Human Mmp-2 Reveals A New P
To Be Published
PubMed: search

Molecule 1 - 72 KDA TYPE IV COLLAGENASE
	Chains	:	A, B, C, D
	EC Number	:	3.4.24.24
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Cell Line	:	HIGH 5
	Expression System Common	:	CABBAGE LOOPER
	Expression System Plasmid	:	PVL1393
	Expression System Taxid	:	7111
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	CATALYTIC DOMAIN RESIDUES 32-452
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GELATINASE A, 72 KDA GELATINASE, MATRIX METALLOPROTEINASE-2, MMP-2

Molecule 2 - INHIBITOR PEPTIDE
	Chains	:	P, R
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synthetic	:	YES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	P	R
Biological Unit 1 (1x)	:	A		C		P
Biological Unit 2 (1x)	:		B		D		R

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 22)

No.	Name	Count	Type	Full Name
1	CA	8	Ligand/Ion	CALCIUM ION
2	SO4	6	Ligand/Ion	SULFATE ION
3	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	SO4	3	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	SO4	3	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:298 , GLY A:299 , THR A:300 , THR C:307	BINDING SITE FOR RESIDUE SO4 A 851
02	AC2	SOFTWARE	HIS A:178 , ASP A:180 , HIS A:193 , HIS A:206	BINDING SITE FOR RESIDUE ZN A 996
03	AC3	SOFTWARE	CYS A:102 , HIS A:403 , HIS A:407 , HIS A:413	BINDING SITE FOR RESIDUE ZN A 997
04	AC4	SOFTWARE	ASP A:185 , GLY A:186 , ASP A:188 , LEU A:190 , ASP A:208 , GLU A:211	BINDING SITE FOR RESIDUE CA A 998
05	AC5	SOFTWARE	ALA A:167 , ASP A:168 , GLY A:198 , GLY A:200 , GLY A:202	BINDING SITE FOR RESIDUE CA A 999
06	AC6	SOFTWARE	GLN B:298 , GLY B:299 , THR B:300 , THR D:307 , ALA R:753	BINDING SITE FOR RESIDUE SO4 B 852
07	AC7	SOFTWARE	LYS B:242 , TYR B:244 , ASN B:245 , SER B:246	BINDING SITE FOR RESIDUE SO4 B 853
08	AC8	SOFTWARE	HIS B:178 , ASP B:180 , HIS B:193 , HIS B:206	BINDING SITE FOR RESIDUE ZN B 996
09	AC9	SOFTWARE	CYS B:102 , HIS B:403 , HIS B:407 , HIS B:413	BINDING SITE FOR RESIDUE ZN B 997
10	BC1	SOFTWARE	ASP B:185 , GLY B:186 , ASP B:188 , LEU B:190 , ASP B:208 , GLU B:211	BINDING SITE FOR RESIDUE CA B 998
11	BC2	SOFTWARE	ASP B:168 , GLY B:198 , GLY B:200 , GLY B:202	BINDING SITE FOR RESIDUE CA B 999
12	BC3	SOFTWARE	THR A:307 , GLN C:298 , GLY C:299 , THR C:300 , ALA P:753	BINDING SITE FOR RESIDUE SO4 C 850
13	BC4	SOFTWARE	ARG C:432 , SER C:434 , GLN C:435	BINDING SITE FOR RESIDUE SO4 C 856
14	BC5	SOFTWARE	HIS C:178 , ASP C:180 , HIS C:193 , HIS C:206	BINDING SITE FOR RESIDUE ZN C 996
15	BC6	SOFTWARE	CYS C:102 , HIS C:403 , HIS C:407 , HIS C:413	BINDING SITE FOR RESIDUE ZN C 997
16	BC7	SOFTWARE	ASP C:185 , GLY C:186 , ASP C:188 , LEU C:190 , ASP C:208 , GLU C:211	BINDING SITE FOR RESIDUE CA C 998
17	BC8	SOFTWARE	ASP C:168 , GLY C:198 , GLY C:200 , GLY C:202	BINDING SITE FOR RESIDUE CA C 999
18	BC9	SOFTWARE	THR B:307 , GLY D:299 , THR D:300	BINDING SITE FOR RESIDUE SO4 D 857
19	CC1	SOFTWARE	HIS D:178 , ASP D:180 , HIS D:193 , HIS D:206	BINDING SITE FOR RESIDUE ZN D 996
20	CC2	SOFTWARE	CYS D:102 , HIS D:403 , HIS D:407 , HIS D:413	BINDING SITE FOR RESIDUE ZN D 997
21	CC3	SOFTWARE	ASP D:185 , GLY D:186 , ASP D:188 , LEU D:190 , ASP D:208 , GLU D:211	BINDING SITE FOR RESIDUE CA D 998
22	CC4	SOFTWARE	ALA D:167 , ASP D:168 , GLY D:200 , GLY D:202	BINDING SITE FOR RESIDUE CA D 999
23	CC5	SOFTWARE	GLY A:130 , TYR A:131 , PRO A:133 , ASP A:209 , HIS A:276 , GLU A:277 , ALA A:278 , PHE A:293 , ASP A:303 , SER A:304 , ARG C:296 , GLY C:299 , SER C:301 , SO4 C:850	BINDING SITE FOR CHAIN P OF INHIBITOR PEPTIDE
24	CC6	SOFTWARE	ARG B:296 , GLN B:298 , GLY B:299 , THR B:300 , SER B:301 , SO4 B:852 , PRO D:133 , ASP D:209 , HIS D:276 , GLU D:277 , ALA D:278 , PHE D:293 , SER D:304 , THR D:306	BINDING SITE FOR CHAIN R OF INHIBITOR PEPTIDE

Asymmetric Unit

No.	Residues
1	A:60	-	A:65
2	A:233	-	A:259
3	A:247	-	A:274
4	A:291	-	A:317
5	A:305	-	A:332
6	A:349	-	A:375
7	A:363	-	A:390
8	B:60	-	B:65
9	B:233	-	B:259
10	B:247	-	B:274
11	B:291	-	B:317
12	B:305	-	B:332
13	B:349	-	B:375
14	B:363	-	B:390
15	C:60	-	C:65
16	C:233	-	C:259
17	C:247	-	C:274
18	C:291	-	C:317
19	C:305	-	C:332
20	C:349	-	C:375
21	C:363	-	C:390
22	D:60	-	D:65
23	D:233	-	D:259
24	D:247	-	D:274
25	D:291	-	D:317
26	D:305	-	D:332
27	D:349	-	D:375
28	D:363	-	D:390
29	D:375	-	D:390

Asymmetric Unit

No.	Residues
1	Phe A:235	-	Pro A:236
2	Phe A:293	-	Pro A:294
3	Phe A:351	-	Pro A:352
4	Phe B:235	-	Pro B:236
5	Phe B:293	-	Pro B:294
6	Phe B:351	-	Pro B:352
7	Phe C:235	-	Pro C:236
8	Phe C:293	-	Pro C:294
9	Phe C:351	-	Pro C:352
10	Phe D:235	-	Pro D:236
11	Phe D:293	-	Pro D:294
12	Phe D:351	-	Pro D:352

Asymmetric Unit (6, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032423	R	101	H	MMP2_HUMAN	Disease (MONA)	121912953	A/B/C/D	R	101	H
2	UniProt	VAR_032424	D	210	Y	MMP2_HUMAN	Polymorphism	---	A/B/C/D	D	210	Y
3	UniProt	VAR_036136	A	228	T	MMP2_HUMAN	Unclassified	759302357	A/B/C/D	A	228	T
4	CancerSNP	VAR_MMP2_HUMAN_CCDS10752_1_01 *	A	228	T	MMP2_HUMAN	Disease (Colorectal cancer)	---	A/B/C/D	A	228	T
5	UniProt	VAR_032425	E	404	K	MMP2_HUMAN	Disease (MONA)	121912955	A/B/C/D	Q	404	K
6	UniProt	VAR_020616	A	447	V	MMP2_HUMAN	Polymorphism	17859943	A/B/C/D	A	447	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (6, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032423	R	101	H	MMP2_HUMAN	Disease (MONA)	121912953	A/C	R	101	H
2	UniProt	VAR_032424	D	210	Y	MMP2_HUMAN	Polymorphism	---	A/C	D	210	Y
3	UniProt	VAR_036136	A	228	T	MMP2_HUMAN	Unclassified	759302357	A/C	A	228	T
4	CancerSNP	VAR_MMP2_HUMAN_CCDS10752_1_01 *	A	228	T	MMP2_HUMAN	Disease (Colorectal cancer)	---	A/C	A	228	T
5	UniProt	VAR_032425	E	404	K	MMP2_HUMAN	Disease (MONA)	121912955	A/C	Q	404	K
6	UniProt	VAR_020616	A	447	V	MMP2_HUMAN	Polymorphism	17859943	A/C	A	447	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (6, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032423	R	101	H	MMP2_HUMAN	Disease (MONA)	121912953	B/D	R	101	H
2	UniProt	VAR_032424	D	210	Y	MMP2_HUMAN	Polymorphism	---	B/D	D	210	Y
3	UniProt	VAR_036136	A	228	T	MMP2_HUMAN	Unclassified	759302357	B/D	A	228	T
4	CancerSNP	VAR_MMP2_HUMAN_CCDS10752_1_01 *	A	228	T	MMP2_HUMAN	Disease (Colorectal cancer)	---	B/D	A	228	T
5	UniProt	VAR_032425	E	404	K	MMP2_HUMAN	Disease (MONA)	121912955	B/D	Q	404	K
6	UniProt	VAR_020616	A	447	V	MMP2_HUMAN	Polymorphism	17859943	B/D	A	447	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (4, 32)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYSTEINE_SWITCH	PS00546	Matrixins cysteine switch.	MMP2_HUMAN	100-107	4	A:100-107 B:100-107 C:100-107 D:100-107
2	FN2_2	PS51092	Fibronectin type-II collagen-binding domain profile.	MMP2_HUMAN	228-276 286-334 344-392	12	A:228-276 B:228-276 C:228-276 D:228-276 A:286-334 B:286-334 C:286-334 D:286-334 A:344-392 B:344-392 C:344-392 D:344-392
3	FN2_1	PS00023	Fibronectin type-II collagen-binding domain signature.	MMP2_HUMAN	233-274 291-332 349-390	12	A:233-274 B:233-274 C:233-274 D:233-274 A:291-332 B:291-332 C:291-332 D:291-332 A:349-390 B:349-390 C:349-390 D:349-390
4	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP2_HUMAN	400-409	4	A:400-409 B:400-409 C:400-409 D:400-409

Biological Unit 1 (4, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYSTEINE_SWITCH	PS00546	Matrixins cysteine switch.	MMP2_HUMAN	100-107	2	A:100-107 - C:100-107 -
2	FN2_2	PS51092	Fibronectin type-II collagen-binding domain profile.	MMP2_HUMAN	228-276 286-334 344-392	6	A:228-276 - C:228-276 - A:286-334 - C:286-334 - A:344-392 - C:344-392 -
3	FN2_1	PS00023	Fibronectin type-II collagen-binding domain signature.	MMP2_HUMAN	233-274 291-332 349-390	6	A:233-274 - C:233-274 - A:291-332 - C:291-332 - A:349-390 - C:349-390 -
4	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP2_HUMAN	400-409	2	A:400-409 - C:400-409 -

Biological Unit 2 (4, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYSTEINE_SWITCH	PS00546	Matrixins cysteine switch.	MMP2_HUMAN	100-107	2	- B:100-107 - D:100-107
2	FN2_2	PS51092	Fibronectin type-II collagen-binding domain profile.	MMP2_HUMAN	228-276 286-334 344-392	6	- B:228-276 - D:228-276 - B:286-334 - D:286-334 - B:344-392 - D:344-392
3	FN2_1	PS00023	Fibronectin type-II collagen-binding domain signature.	MMP2_HUMAN	233-274 291-332 349-390	6	- B:233-274 - D:233-274 - B:291-332 - D:291-332 - B:349-390 - D:349-390
4	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	MMP2_HUMAN	400-409	2	- B:400-409 - D:400-409

Asymmetric Unit (9, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000219070	1	ENSE00001045278	chr16:55512883-55513544	662	MMP2_HUMAN	1-51	51	4	A:32-51 B:32-51 C:32-51 D:32-51	20 20 20 20
1.3	ENST00000219070	3	ENSE00000684353	chr16:55516821-55517047	227	MMP2_HUMAN	52-127	76	4	A:52-127 B:52-127 C:52-127 D:52-127	76 76 76 76
1.4	ENST00000219070	4	ENSE00000684376	chr16:55517928-55518076	149	MMP2_HUMAN	127-177	51	4	A:127-177 B:127-177 C:127-177 D:127-177	51 51 51 51
1.5	ENST00000219070	5	ENSE00000684379	chr16:55519211-55519339	129	MMP2_HUMAN	177-220	44	4	A:177-220 B:177-220 C:177-220 D:177-220	44 44 44 44
1.6	ENST00000219070	6	ENSE00000684383	chr16:55519516-55519689	174	MMP2_HUMAN	220-278	59	4	A:220-278 B:220-278 C:220-278 D:220-278	59 59 59 59
1.7	ENST00000219070	7	ENSE00000396666	chr16:55522455-55522628	174	MMP2_HUMAN	278-336	59	4	A:278-336 B:278-336 C:278-336 D:278-336	59 59 59 59
1.8	ENST00000219070	8	ENSE00000684389	chr16:55523563-55523736	174	MMP2_HUMAN	336-394	59	4	A:336-394 B:336-394 C:336-394 D:336-394	59 59 59 59
1.9	ENST00000219070	9	ENSE00001170187	chr16:55525713-55525868	156	MMP2_HUMAN	394-446	53	4	A:394-446 B:394-446 C:394-446 D:394-446	53 53 53 53
1.10	ENST00000219070	10	ENSE00000684415	chr16:55527070-55527205	136	MMP2_HUMAN	446-491	46	4	A:446-452 B:446-450 C:446-449 D:446-450	7 5 4 5
1.11	ENST00000219070	11	ENSE00000684425	chr16:55530838-55530974	137	MMP2_HUMAN	491-537	47	0	-	-
1.12	ENST00000219070	12	ENSE00000684426	chr16:55532201-55532360	160	MMP2_HUMAN	537-590	54	0	-	-
1.13	ENST00000219070	13	ENSE00000684427	chr16:55536691-55536800	110	MMP2_HUMAN	590-627	38	0	-	-
1.14b	ENST00000219070	14b	ENSE00001931477	chr16:55539251-55540603	1353	MMP2_HUMAN	627-660	34	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:421
 aligned with MMP2_HUMAN | P08253 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:421
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451 
           MMP2_HUMAN    32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDID 452
               SCOP domains d1eaka1 A:32-107 Gelatinase A (MMP-2)                                       d1eaka2 A:108-216,A:394-452 Gelatinase A                                                                     d1eaka3 A:217-277 Gelatinase A (MMP-2) type II modules       d1eaka4 A:278-335 Gelatinase A (MMP-2) type II modules    d1eaka5 A:336-393 Gelatinase A (MMP-2) type II modules    d1eaka2 A:108-216,A:394-452 Gelatinase A                    SCOP domains
               CATH domains -------------1eakA01 A:45-107                                               1eakA02 A:108-218,A:392-452 Collagenase (Catalytic Domain)                                                     -1eakA03 A:220-276  [code=2.10.10.10, no name defined]    1eakA04 A:277-335  [code=2.10.10.10, no name defined]      1eakA05 A:336-391  [code=2.10.10.10, no name defined]   1eakA02 A:108-218,A:392-452 Collagenase (Catalytic Domain)    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh........hhhhhhhhhhhhhhhh........hhhhhhhhh........................eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee..........hhhhh.......eee..eee.............eee..........eee.....................eee..eee.............eee..........eee.....................eee..eee.............eee...hhhhhh.eee.....eehhhhhhhhhhhhh........................hhhhhhhhhhhhh...... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------H------------------------------------------------------------------------------------------------------------Y-----------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K------------------------------------------V----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) --------------------------------------------------------------------CYSTEINE------------------------------------------------------------------------------------------------------------------------FN2_2  PDB: A:228-276 UniProt: 228-276           ---------FN2_2  PDB: A:286-334 UniProt: 286-334           ---------FN2_2  PDB: A:344-392 UniProt: 344-392           -------ZINC_PROTE------------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FN2_1  PDB: A:233-274 UniProt: 233-274    ----------------FN2_1  PDB: A:291-332 UniProt: 291-332    ----------------FN2_1  PDB: A:349-390 UniProt: 349-390    -------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1            Exon 1.3  PDB: A:52-127 UniProt: 52-127                                     -------------------------------------------------Exon 1.5  PDB: A:177-220 UniProt: 177-220   ---------------------------------------------------------Exon 1.7  PDB: A:278-336 UniProt: 278-336                  -------------------------------------------------------------------------------------------------------------1.10    Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------Exon 1.4  PDB: A:127-177 UniProt: 127-177          ------------------------------------------Exon 1.6  PDB: A:220-278 UniProt: 220-278                  ---------------------------------------------------------Exon 1.8  PDB: A:336-394 UniProt: 336-394                  ---------------------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:394-446 UniProt: 394-446            ------ Transcript 1 (3)
                 1eak A  32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDID 452
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451

Chain B from PDB  Type:PROTEIN  Length:419
 aligned with MMP2_HUMAN | P08253 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:419
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
           MMP2_HUMAN    32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 450
               SCOP domains d1eakb1 B:32-107 Gelatinase A (MMP-2)                                       d1eakb2 B:108-216,B:394-450 Gelatinase A                                                                     d1eakb3 B:217-277 Gelatinase A (MMP-2) type II modules       d1eakb4 B:278-335 Gelatinase A (MMP-2) type II modules    d1eakb5 B:336-393 Gelatinase A (MMP-2) type II modules    d1eakb2 B:108-216,B:394-450 Gelatinase A                  SCOP domains
               CATH domains -------------1eakB01 B:45-107                                               1eakB02 B:108-218,B:392-450 Collagenase (Catalytic Domain)                                                     -1eakB03 B:220-276  [code=2.10.10.10, no name defined]    1eakB04 B:277-335  [code=2.10.10.10, no name defined]      1eakB05 B:336-391  [code=2.10.10.10, no name defined]   1eakB02 B:108-218,B:392-450 Collagenase (Catalytic Domain)  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhh........................eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee......................eee..eee.............eee...hhhhhh.eee.....................eee..eee.............eee...hhhhhh.eee.....................eee..eee.............eee...hhhhhh.eee.....eehhhhhhhhhhhhh........................hhhhhhhhhhhhh.... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------H------------------------------------------------------------------------------------------------------------Y-----------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K------------------------------------------V--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                PROSITE (1) --------------------------------------------------------------------CYSTEINE------------------------------------------------------------------------------------------------------------------------FN2_2  PDB: B:228-276 UniProt: 228-276           ---------FN2_2  PDB: B:286-334 UniProt: 286-334           ---------FN2_2  PDB: B:344-392 UniProt: 344-392           -------ZINC_PROTE----------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FN2_1  PDB: B:233-274 UniProt: 233-274    ----------------FN2_1  PDB: B:291-332 UniProt: 291-332    ----------------FN2_1  PDB: B:349-390 UniProt: 349-390    ------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1            Exon 1.3  PDB: B:52-127 UniProt: 52-127                                     -------------------------------------------------Exon 1.5  PDB: B:177-220 UniProt: 177-220   ---------------------------------------------------------Exon 1.7  PDB: B:278-336 UniProt: 278-336                  -------------------------------------------------------------------------------------------------------------1.10  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------Exon 1.4  PDB: B:127-177 UniProt: 127-177          ------------------------------------------Exon 1.6  PDB: B:220-278 UniProt: 220-278                  ---------------------------------------------------------Exon 1.8  PDB: B:336-394 UniProt: 336-394                  -------------------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: B:394-446 UniProt: 394-446            ---- Transcript 1 (3)
                 1eak B  32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 450
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Chain C from PDB  Type:PROTEIN  Length:418
 aligned with MMP2_HUMAN | P08253 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:418
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441        
           MMP2_HUMAN    32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASP 449
               SCOP domains d1eakc1 C:32-107 Gelatinase A (MMP-2)                                       d1eakc2 C:108-216,C:394-449 Gelatinase A                                                                     d1eakc3 C:217-277 Gelatinase A (MMP-2) type II modules       d1eakc4 C:278-335 Gelatinase A (MMP-2) type II modules    d1eakc5 C:336-393 Gelatinase A (MMP-2) type II modules    d1eakc2 C:108-216,C:394-449 Gelatinase A                 SCOP domains
               CATH domains -------------1eakC01 C:45-107                                               1eakC02 C:108-218,C:392-449 Collagenase (Catalytic Domain)                                                     -1eakC03 C:220-276  [code=2.10.10.10, no name defined]    1eakC04 C:277-335  [code=2.10.10.10, no name defined]      1eakC05 C:336-391  [code=2.10.10.10, no name defined]   1eakC02 C:108-218,C:392-449 Collagenase (Catalytic Domain) CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.........hhhhhhhhhhhhhhh........hhhhhhhhh........................eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee......................ee....ee.............eee..........eee.....................ee....ee.............eee...hhhhhh.eee.....................eee..eee.............eee..........eee.....eehhhhhhhhhhhhh........................hhhhhhhhhh...... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------H------------------------------------------------------------------------------------------------------------Y-----------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K------------------------------------------V-- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) --------------------------------------------------------------------CYSTEINE------------------------------------------------------------------------------------------------------------------------FN2_2  PDB: C:228-276 UniProt: 228-276           ---------FN2_2  PDB: C:286-334 UniProt: 286-334           ---------FN2_2  PDB: C:344-392 UniProt: 344-392           -------ZINC_PROTE---------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FN2_1  PDB: C:233-274 UniProt: 233-274    ----------------FN2_1  PDB: C:291-332 UniProt: 291-332    ----------------FN2_1  PDB: C:349-390 UniProt: 349-390    ----------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1            Exon 1.3  PDB: C:52-127 UniProt: 52-127                                     -------------------------------------------------Exon 1.5  PDB: C:177-220 UniProt: 177-220   ---------------------------------------------------------Exon 1.7  PDB: C:278-336 UniProt: 278-336                  -------------------------------------------------------------------------------------------------------------1.10 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------Exon 1.4  PDB: C:127-177 UniProt: 127-177          ------------------------------------------Exon 1.6  PDB: C:220-278 UniProt: 220-278                  ---------------------------------------------------------Exon 1.8  PDB: C:336-394 UniProt: 336-394                  ------------------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: C:394-446 UniProt: 394-446            --- Transcript 1 (3)
                 1eak C  32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASP 449
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Chain D from PDB  Type:PROTEIN  Length:419
 aligned with MMP2_HUMAN | P08253 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:419
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441         
           MMP2_HUMAN    32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 450
               SCOP domains d1eakd1 D:32-107 Gelatinase A (MMP-2)                                       d1eakd2 D:108-216,D:394-450 Gelatinase A                                                                     d1eakd3 D:217-277 Gelatinase A (MMP-2) type II modules       d1eakd4 D:278-335 Gelatinase A (MMP-2) type II modules    d1eakd5 D:336-393 Gelatinase A (MMP-2) type II modules    d1eakd2 D:108-216,D:394-450 Gelatinase A                  SCOP domains
               CATH domains -------------1eakD01 D:45-107                                               1eakD02 D:108-218,D:392-450 Collagenase (Catalytic Domain)                                                     -1eakD03 D:220-276  [code=2.10.10.10, no name defined]    1eakD04 D:277-335  [code=2.10.10.10, no name defined]      1eakD05 D:336-391  [code=2.10.10.10, no name defined]   1eakD02 D:108-218,D:392-450 Collagenase (Catalytic Domain)  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh..........hhhhhhhhhhhhh........hhhhhhhhh........................eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee......................ee....ee.............eee..........eee.....................eee..eee.............eee..........eee.....................eee..eee.............eee..........eee.....eehhhhhhhhhhhhh........................hhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------H------------------------------------------------------------------------------------------------------------Y-----------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K------------------------------------------V--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                PROSITE (1) --------------------------------------------------------------------CYSTEINE------------------------------------------------------------------------------------------------------------------------FN2_2  PDB: D:228-276 UniProt: 228-276           ---------FN2_2  PDB: D:286-334 UniProt: 286-334           ---------FN2_2  PDB: D:344-392 UniProt: 344-392           -------ZINC_PROTE----------------------------------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FN2_1  PDB: D:233-274 UniProt: 233-274    ----------------FN2_1  PDB: D:291-332 UniProt: 291-332    ----------------FN2_1  PDB: D:349-390 UniProt: 349-390    ------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1            Exon 1.3  PDB: D:52-127 UniProt: 52-127                                     -------------------------------------------------Exon 1.5  PDB: D:177-220 UniProt: 177-220   ---------------------------------------------------------Exon 1.7  PDB: D:278-336 UniProt: 278-336                  -------------------------------------------------------------------------------------------------------------1.10  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------Exon 1.4  PDB: D:127-177 UniProt: 127-177          ------------------------------------------Exon 1.6  PDB: D:220-278 UniProt: 220-278                  ---------------------------------------------------------Exon 1.8  PDB: D:336-394 UniProt: 336-394                  -------------------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: D:394-446 UniProt: 394-446            ---- Transcript 1 (3)
                 1eak D  32 SPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 450
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Chain P from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 1eak P 746 GPAGPPGA 753

Chain R from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 1eak R 746 GPAGPPGA 753

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: PGBD-like (9)

Superfamily: PGBD-like (9)

Family: MMP N-terminal domain (6)

Protein domain: Gelatinase A (MMP-2) (3)

Human (Homo sapiens) [TaxId: 9606] (3)

1a	d1eaka1	A:32-107
1b	d1eakb1	B:32-107
1c	d1eakc1	C:32-107
1d	d1eakd1	D:32-107

Class: Alpha and beta proteins (a+b) (23004)

Fold: Zincin-like (701)

Superfamily: Metalloproteases (zincins), catalytic domain (647)

Family: Matrix metalloproteases, catalytic domain (199)

Protein domain: Gelatinase A (4)

Human (Homo sapiens) [TaxId: 9606] (4)

2a	d1eaka2	A:108-216,A:394-452
2b	d1eakb2	B:108-216,B:394-450
2c	d1eakc2	C:108-216,C:394-449
2d	d1eakd2	D:108-216,D:394-450

Class: Small proteins (3458)

Fold: Kringle-like (68)

Superfamily: Kringle-like (68)

Family: Fibronectin type II module (13)

Protein domain: Gelatinase A (MMP-2) type II modules (6)

Human (Homo sapiens) [TaxId: 9606] (6)

3a	d1eaka3	A:217-277
3b	d1eaka4	A:278-335
3c	d1eakd4	D:278-335
3d	d1eakd5	D:336-393
3e	d1eaka5	A:336-393
3f	d1eakb3	B:217-277
3g	d1eakb4	B:278-335
3h	d1eakb5	B:336-393
3i	d1eakc3	C:217-277
3j	d1eakc4	C:278-335
3k	d1eakc5	C:336-393
3l	d1eakd3	D:217-277

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Collagenase (Catalytic Domain) (236)

Homologous Superfamily: Collagenase (Catalytic Domain) (234)

Human (Homo sapiens) (153)

1a	1eakA02	A:108-218,A:392-452
1b	1eakB02	B:108-218,B:392-450
1c	1eakD02	D:108-218,D:392-450
1d	1eakC02	C:108-218,C:392-449

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Muramoyl-pentapeptide Carboxypeptidase; domain 1 (3)

Homologous Superfamily: Muramoyl-pentapeptide Carboxypeptidase, domain 1 (3)

Human (Homo sapiens) (2)

2a	1eakA01	A:45-107
2b	1eakB01	B:45-107
2c	1eakC01	C:45-107
2d	1eakD01	D:45-107

Class: Mainly Beta (13760)

Architecture: Ribbon (789)

Topology: Seminal Fluid Protein PDC-109 (Domain B) (33)

Homologous Superfamily: [code=2.10.10.10, no name defined] (13)

Human (Homo sapiens) (11)

3a	1eakA05	A:336-391
3b	1eakA03	A:220-276
3c	1eakB03	B:220-276
3d	1eakC03	C:220-276
3e	1eakB05	B:336-391
3f	1eakD03	D:220-276
3g	1eakA04	A:277-335
3h	1eakB04	B:277-335
3i	1eakC04	C:277-335
3j	1eakD04	D:277-335
3k	1eakC05	C:336-391
3l	1eakD05	D:336-391

(no "Pfam Domain" information available for 1EAK)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (MMP2_HUMAN | P08253)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0001525	angiogenesis	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
	GO:0001955	blood vessel maturation	A developmental process, independent of morphogenetic (shape) change, that is required for a blood vessel to attain its fully functional state.
	GO:0060346	bone trabecula formation	The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0071230	cellular response to amino acid stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups.
	GO:0030574	collagen catabolic process	The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
	GO:0007566	embryo implantation	Attachment of the blastocyst to the uterine lining.
	GO:0035987	endodermal cell differentiation	The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.
	GO:0048013	ephrin receptor signaling pathway	The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0060325	face morphogenesis	The process in which the anatomical structures of the face are generated and organized. The face is the ventral division of the head.
	GO:0001957	intramembranous ossification	Direct ossification that occurs within mesenchyme or an accumulation of relatively unspecialized cells.
	GO:0045089	positive regulation of innate immune response	Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0001666	response to hypoxia	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
	GO:0048705	skeletal system morphogenesis	The process in which the anatomical structures of the skeleton are generated and organized.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.
	GO:0030017	sarcomere	The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.

Asymmetric Unit
	Complete Structure
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	1eak
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	3.4.24.24
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UniProtKB/Swiss-Prot
	MMP2_HUMAN \| P08253	:	1ck7 1cxw 1gen 1gxd 1hov 1j7m 1ks0 1qib 1rtg 3ayu

1ck7	GELATINASE A (FULL-LENGTH)
1cxw	THE SECOND TYPE II MODULE FROM HUMAN MATRIXMETALLOPROTEINASE 2
1gen	C-TERMINAL DOMAIN OF GELATINASE A
1j7m	THE THIRD FIBRONECTIN TYPE II MODULE FROM HUMAN MATRIXMETALLOPROTEINASE 2
1rtg	C-TERMINAL DOMAIN (HAEMOPEXIN-LIKE DOMAIN) OF HUMAN MATRIXMETALLOPROTEINASE-2

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 22)

Sites (24, 24)

SS Bonds (29, 29)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (6, 24)

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Exons (9, 36)

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SCOP Domains (3, 20)

CATH Domains (3, 20)

Pfam Domains (0, 0)

Gene Ontology (34, 34)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File