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Asym./Biol. Unit (Jmol Viewer)

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Title :   ELONGATION FACTOR G IN COMPLEX WITH GDP

Authors :   S. Al-Karadaghi, A. Aevarsson, M. Garber, J. Zheltonosova, A. Liljas

Date :   15 Feb 96 (Deposition) - 11 Jul 96 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A

Keywords :   Ribosomal Translocase, Translational Gtpase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Al-Karadaghi, A. Aevarsson, M. Garber, J. Zheltonosova, A. Liljas
The Structure Of Elongation Factor G In Complex With Gdp: Conformational Flexibility And Nucleotide Exchange.
Structure V. 4 555 1996
PubMed-ID: 8736554 | Reference-DOI: 10.1016/S0969-2126(96)00061-5
(for further references see the PDB file header)

Molecule 1 - ELONGATION FACTOR G
	Chains	:	A
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8
	Synonym	:	EF-G

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:22 , ALA A:23 , GLY A:24 , LYS A:25 , THR A:26 , THR A:27 , ASN A:137 , LYS A:138 , ASP A:140 , SER A:262 , ALA A:263 , LEU A:264 , HOH A:735	BINDING SITE FOR RESIDUE GDP A 692

(no "SS Bond" information available for 1DAR)

(no "Cis Peptide Bond" information available for 1DAR)

(no "SAP(SNP)/Variant" information available for 1DAR)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFG_THET8	53-68	1	A:67-68

(no "Exon" information available for 1DAR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:619
 aligned with EFG_THET8 | Q5SHN5 from UniProtKB/Swiss-Prot  Length:691

    Alignment length:689
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680         
            EFG_THET8     1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
               SCOP domains d1dara2 A:1-282 Elongation factor G (EF                           -G), N-terminal (G) domain                                                                                                                                                                                              d1dara1 A:283-400 Elongation factor G (EF-G), domain II                                                               -                               -----------    ----------        ----------d1dara3 A:476-599 Elongation factor G (EF-G), domain IV                                                                     d1dara4 A:600-689 Elongation factor G (EF-G)                                               SCOP domains
               CATH domains 1darA01 A:1-286 P-loop containing nucle                           otide triphosphate hydrolases                                                                                                                                                                                               ----------------1darA02 A:303-400 Translation factors                                                             -                               1darA03 A:4    33-483                              1darA04 A:484-602  [code=3.30.230.10, no name defined]                                                                 1darA05 A:603-689  [code=3.30.70.240, no name defined]                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhheeeeeeee.....hhhhhhhhhhhh...---------------------------..eeeeee..eeeeee........hhhhhhhhhh..eeeeeee......hhhhhhhhhhhh...eeeeeee........hhhhhhhhhh.....eee.eeee..hhh..eeee....eeeee.......eeee...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhh....eeeee..hhh...hhhhhhhhhhh.........eeee.....eeee........eeee.eeeee...eeeeeeeeee.eee...eeee....eeee..eeeee....eeee.eee...eeeee.........eeee..........-------------------------------...........----...eee....--------....eee...........eee....eeeeeeeee......eeeeeeeeeee......eeeee...........hhhhhhhhhhhhh...........eeeeeeee........hhhhhhhhhhhhhhhhh....eeeeeeeeeeeee......hhhhhhhhh.............eeeeeeee......hhhhhhhhh....eeeeeeeeeee..hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dar A   1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI---------------------------AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILES-------------------------------EEDPTFRVSTH----QTIISGMGEL--------LKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
                                    10        20        30        |-         -         -      | 70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400|        -         -         -  |    440  |    450      |  -     | 470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680         
                                                                 39                          67                                                                                                                                                                                                                                                                                                                                           401                             433       443  448      457      466

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1DAR)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (EFG_THET8 | Q5SHN5)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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Ligands, Modified Residues, Ions (1, 1)

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