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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   ELONGATION FACTOR G WITHOUT NUCLEOTIDE

Authors :   A. Aevarsson, E. Brazhnikov, M. Garber, J. Zheltonosova, Yu. Chirgadz Karadaghi, L. A. Svensson, A. Liljas

Date :   13 Mar 96 (Deposition) - 01 Aug 96 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A

Keywords :   Ribosomal Translocase, Gtp Binding Protein, Hydrolase, Elongation Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Aevarsson, E. Brazhnikov, M. Garber, J. Zheltonosova, Y. Chirgadze, S. Al-Karadaghi, L. A. Svensson, A. Liljas
Three-Dimensional Structure Of The Ribosomal Translocase: Elongation Factor G From Thermus Thermophilus.
Embo J. V. 13 3669 1994
PubMed-ID: 8070397
(for further references see the PDB file header)

Molecule 1 - ELONGATION FACTOR G
	Chains	:	A
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8
	Synonym	:	TRANSLOCASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1ELO)

(no "Site" information available for 1ELO)

(no "SS Bond" information available for 1ELO)

(no "Cis Peptide Bond" information available for 1ELO)

(no "SAP(SNP)/Variant" information available for 1ELO)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFG_THET8	53-68	1	A:68-68

(no "Exon" information available for 1ELO)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:632
 aligned with EFG_THET8 | Q5SHN5 from UniProtKB/Swiss-Prot  Length:691

    Alignment length:685
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684     
            EFG_THET8     5 VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
               SCOP domains d1eloa2 A:5-282 Elongation factor G                             (EF-G), N-terminal (G) domain                                                                                                                                                                                         d1eloa1 A:283-399 Elongation factor G (EF-G), domain II                                                                       --------        --------------------   -----------------------     d1eloa3 A:476-599 Elongation factor G (EF-G), domain IV                                                                     d1eloa4 A:600-689 Elongation factor G (EF-G)                                               SCOP domains
               CATH domains 1eloA01 A:5-286 P-loop containing n                            ucleotide triphosphate hydrolases                                                                                                                                                                                          ----------------1eloA02 A:303-409 Translation factors                                                                      -------        --------1eloA03 A:43   3-483                               1eloA04 A:484-602  [code=3.30.230.10, no name defined]                                                                 1eloA05 A:603-684  [code=3.30.70.240, no name defined]                            ----- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....hhhh.hhhhhhhhhhh...----------------------------..eeeee..eeeee.........hhhhhhhhh.....eeee.hhh...hhhhhhhhhhhh.....eeee.........hhhhhhhhhh.........eee.........eee.....eeee.......eeee...hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.......hhhhhhhhhhhh.......eee..hhh...hhhhhhhhhhh..............................eeee.eee.......eeeeeeee.eee..eeee.hhh..eeee.eeee......eee.eee...eeeee.........eee.........---------........--------....................---..........hhhhhhh......-----........eee......................eeeee..........eeee...........hhhhhhhhhhhhh............eeeeeeee..............hhhhhhhhhh....eeeeee..eeeee.......hhhhhhhh.....eeee....eeeee.........hhhhhhhhh...........eee...hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1elo A   5 VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI----------------------------AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVIL---------IDVAIEPK--------SQALARLAEEDPTFRVSTHP---QTIISGMGELHLEIIVDRLKREF-----VGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
                                    14        24        34    |    -         -         -   |    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    |    -    |  414 |       -|      434       444   |   454       464     |   - |     484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684     
                                                             39                           68                                                                                                                                                                                                                                                                                                                                        399       409    416      425                444 448                   470   476

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1ELO)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (EFG_THET8 | Q5SHN5)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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