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1DAR
Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
ELONGATION FACTOR G IN COMPLEX WITH GDP
Authors
:
S. Al-Karadaghi, A. Aevarsson, M. Garber, J. Zheltonosova, A. Liljas
Date
:
15 Feb 96 (Deposition) - 11 Jul 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ribosomal Translocase, Translational Gtpase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Al-Karadaghi, A. Aevarsson, M. Garber, J. Zheltonosova, A. Liljas
The Structure Of Elongation Factor G In Complex With Gdp: Conformational Flexibility And Nucleotide Exchange.
Structure V. 4 555 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
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Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:22 , ALA A:23 , GLY A:24 , LYS A:25 , THR A:26 , THR A:27 , ASN A:137 , LYS A:138 , ASP A:140 , SER A:262 , ALA A:263 , LEU A:264 , HOH A:735
BINDING SITE FOR RESIDUE GDP A 692
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:67-68)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFG_THET8
53-68
1
A:67-68
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1dara1 (A:283-400)
2a: SCOP_d1dara4 (A:600-689)
3a: SCOP_d1dara3 (A:476-599)
4a: SCOP_d1dara2 (A:1-282)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor G (EF-G), domain II
(11)
Thermus thermophilus [TaxId: 274]
(9)
1a
d1dara1
A:283-400
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
EF-G C-terminal domain-like
(33)
Family
:
EF-G/eEF-2 domains III and V
(24)
Protein domain
:
Elongation factor G (EF-G)
(11)
Thermus thermophilus [TaxId: 274]
(9)
2a
d1dara4
A:600-689
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Translational machinery components
(150)
Protein domain
:
Elongation factor G (EF-G), domain IV
(11)
Thermus thermophilus [TaxId: 274]
(9)
3a
d1dara3
A:476-599
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor G (EF-G), N-terminal (G) domain
(11)
Thermus thermophilus [TaxId: 274]
(9)
4a
d1dara2
A:1-282
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CATH Domains
(5, 5)
Info
all CATH domains
1a: CATH_1darA05 (A:603-689)
2a: CATH_1darA03 (A:433-483)
3a: CATH_1darA04 (A:484-602)
4a: CATH_1darA01 (A:1-286)
5a: CATH_1darA02 (A:303-400)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.240, no name defined]
(21)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8
(2)
1a
1darA05
A:603-689
Homologous Superfamily
:
Elongation Factor G (Translational Gtpase), domain 3
(20)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8
(2)
2a
1darA03
A:433-483
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8
(2)
3a
1darA04
A:484-602
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8
(2)
4a
1darA01
A:1-286
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8
(2)
5a
1darA02
A:303-400
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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