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(-) Description

Title :  NMR SOLUTION STRUCTURE OF APO CALMODULIN CARBOXY-TERMINAL DOMAIN
 
Authors :  B. E. Finn, J. Evenas, T. Drakenberg, J. P. Waltho, E. Thulin, S. Forsen
Date :  19 Jul 95  (Deposition) - 07 Dec 95  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. E. Finn, J. Evenas, T. Drakenberg, J. P. Waltho, E. Thulin, S. Forsen
Calcium-Induced Structural Changes And Domain Autonomy In Calmodulin.
Nat. Struct. Biol. V. 2 777 1995
PubMed-ID: 7552749  |  Reference-DOI: 10.1038/NSB0995-777
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALMODULIN (VERTEBRATE)
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPRCB1
    Expression System Taxid562
    OrganBRAIN
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCALMODULIN APO TR2C-DOMAIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CMF)

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1EF3UNKNOWNASP A:93 , LYS A:94 , ASP A:95 , GLY A:96 , ASN A:97 , GLY A:98 , TYR A:99 , ILE A:100 , SER A:101 , ALA A:102 , ALA A:103 , GLU A:104NULL
2EF4UNKNOWNASP A:129 , ILE A:130 , ASP A:131 , GLY A:132 , ASP A:133 , GLY A:134 , GLN A:135 , VAL A:136 , ASN A:137 , TYR A:138 , GLU A:139 , GLU A:140NULL

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CMF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CMF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CMF)

(-) PROSITE Motifs  (2, 4)

NMR Structure (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CALM_BOVIN8-43
44-79
81-116
117-149
  2-
-
A:80-115
A:116-148
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CALM_BOVIN21-33
57-69
94-106
130-142
  2-
-
A:93-105
A:129-141

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.7ENSBTAT000000194117ENSBTAE00000320796chr18:53531460-5353154990CALM_BOVIN1-110--
1.8ENSBTAT000000194118ENSBTAE00000157831chr18:53535790-5353582031CALM_BOVIN2-12110--
1.9ENSBTAT000000194119ENSBTAE00000428812chr18:53537981-53538124144CALM_BOVIN12-60490--
1.10ENSBTAT0000001941110ENSBTAE00000416563chr18:53538265-53538371107CALM_BOVIN60-95361A:76-9419
1.11ENSBTAT0000001941111ENSBTAE00000389868chr18:53538749-53538884136CALM_BOVIN96-141461A:95-14046
1.12ENSBTAT0000001941112ENSBTAE00000245541chr18:53538967-535405331567CALM_BOVIN141-14991A:140-1489

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:73
 aligned with CALM_BOVIN | P62157 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:73
                                    86        96       106       116       126       136       146   
           CALM_BOVIN    77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
               SCOP domains d1cmfa_ A: Calmodulin                                                     SCOP domains
               CATH domains 1cmfA00 A:76-148 EF-hand                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.....ee.hhhhhhh.........hhhhhhhhhhh.......eehhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) EF_-EF_HAND_2  PDB: A:80-115            EF_HAND_2  PDB: A:116-148         PROSITE (1)
                PROSITE (2) -----------------EF_HAND_1    -----------------------EF_HAND_1    ------- PROSITE (2)
           Transcript 1 (1) Exon 1.10          Exon 1.11  PDB: A:95-140 UniProt: 96-141      -------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.12 Transcript 1 (2)
                 1cmf A  76 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 148
                                    85        95       105       115       125       135       145   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CMF)

(-) Gene Ontology  (17, 17)

NMR Structure(hide GO term definitions)
Chain A   (CALM_BOVIN | P62157)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0000086    G2/M transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex.
    GO:0006936    muscle contraction    A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
    GO:0060315    negative regulation of ryanodine-sensitive calcium-release channel activity    Any process that decreases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.
    GO:0043388    positive regulation of DNA binding    Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
    GO:0060316    positive regulation of ryanodine-sensitive calcium-release channel activity    Any process that increases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.
    GO:0010880    regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum    Any process that modulates the rate, frequency or extent of release of sequestered calcium ion into cytosol by the sarcoplasmic reticulum, the process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels.
    GO:0022400    regulation of rhodopsin mediated signaling pathway    Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005819    spindle    The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.
    GO:0000922    spindle pole    Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
    GO:0008076    voltage-gated potassium channel complex    A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM_BOVIN | P621571a29 1aji 1ak8 1cdm 1cm1 1cm4 1cmg 1deg 1fw4 1k90 1k93 1lin 1lvc 1nkf 1prw 1qiv 1qiw 1sk6 1up5 1xa5 2cln 2f2o 2f2p 2fot 3cln 3if7

(-) Related Entries Specified in the PDB File

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