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(-) Description

Title :  DETERMINATION OF THE SOLUTION STRUCTURE OF APO CALBINDIN D9K BY NMR SPECTROSCOPY
 
Authors :  N. J. Skelton, W. J. Chazin
Date :  08 Feb 95  (Deposition) - 20 Apr 95  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (33x)
Keywords :  Ef-Hand, Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. J. Skelton, J. Kordel, W. J. Chazin
Determination Of The Solution Structure Of Apo Calbindin D9K By Nmr Spectroscopy.
J. Mol. Biol. V. 249 441 1995
PubMed-ID: 7783203  |  Reference-DOI: 10.1006/JMBI.1995.0308
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALBINDIN D9K
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PICB1
    Expression System Taxid: 562
    Gene: ICABP
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  
NMR Structure (33x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CLB)

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1LOAUNKNOWNALA A:14 , ALA A:15 , LYS A:16 , GLU A:17 , GLY A:18 , ASP A:19 , PRO A:20 , ASN A:21 , GLN A:22 , LEU A:23 , SER A:24 , LYS A:25 , GLU A:26 , GLU A:27NULL
2LOBUNKNOWNASP A:54 , LYS A:55 , ASN A:56 , GLY A:57 , ASP A:58 , GLY A:59 , GLU A:60 , VAL A:61 , SER A:62 , PHE A:63 , GLU A:64 , GLU A:65NULL

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CLB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CLB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CLB)

(-) PROSITE Motifs  (3, 3)

NMR Structure (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S100G_BOVIN45-79  1A:41-75
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S100G_BOVIN53-74  1A:49-70
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S100G_BOVIN58-70  1A:54-66

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000226301ENSBTAE00000325724Un.004.79:167452-16749746S100G_BOVIN-00--
1.2ENSBTAT000000226302ENSBTAE00000184836Un.004.79:168025-168168144S100G_BOVIN1-45451A:1-4141
1.3ENSBTAT000000226303ENSBTAE00000184843Un.004.79:171280-171540261S100G_BOVIN46-79341A:42-7534

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with S100G_BOVIN | P02633 from UniProtKB/Swiss-Prot  Length:79

    Alignment length:75
                                    14        24        34        44        54        64        74     
           S100G_BOVIN    5 KSPEELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKGPSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 79
               SCOP domains d1clba_ A: Calbindin D9K                                                    SCOP domains
               CATH domains 1clbA00 A:1-75 EF-hand                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.......eeehhhhhhhhhhh.hhh.......hhhhhhh......eeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------EF_HAND_2  PDB: A:41-75             PROSITE (1)
                PROSITE (2) ------------------------------------------------S100_CABP  PDB: A:49-7----- PROSITE (2)
                PROSITE (3) -----------------------------------------------------EF_HAND_1    --------- PROSITE (3)
               Transcript 1 Exon 1.2  PDB: A:1-41 UniProt: 1-45      Exon 1.3  PDB: A:42-75             Transcript 1
                  1clb A  1 KSPEELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKGGSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ 75
                                    10        20        30        40        50        60        70
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CLB)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (S100G_BOVIN | P02633)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005499    vitamin D binding    Interacting selectively and non-covalently with vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3).
cellular component
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S100G_BOVIN | P02633: 1b1g 1boc 1bod 1cdn 1d1o 1ht9 1ig5 1igv 1kcy 1kqv 1ksm 1n65 1qx2 1rt0 2bca 2bcb 2maz 3icb 4icb

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