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(-) Description

Title :  DETERMINANTS OF ENZYME THERMOSTABILITY OBSERVED IN THE MOLECULAR STRUCTURE OF THERMUS AQUATICUS D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 2.5 ANGSTROMS RESOLUTION
 
Authors :  J. J. Tanner, R. M. Hecht, K. L. Krause
Date :  11 Nov 95  (Deposition) - 08 Mar 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,O,P,Q,R
Biol. Unit 1:  O,P,Q,R  (1x)
Biol. Unit 2:  A,B,C,D  (1x)
Keywords :  Glycolysis, Oxidoreductase, Nad, Oxidoreductase (Aldehyde(D)-Nad(A)) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Tanner, R. M. Hecht, K. L. Krause
Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde-3-Phosphate Dehydrogenase At 25 Angstroms Resolution.
Biochemistry V. 35 2597 1996
PubMed-ID: 8611563  |  Reference-DOI: 10.1021/BI951988Q
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: O, P, Q, R, A, B, C, D
    EC Number: 1.2.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: THERMUS AQUATICUS GAPDH
    Expression System Plasmid: PBR322
    Expression System Strain: W3CG
    Expression System Taxid: 562
    Gene: THERMUS AQUATICUS GAPDH
    Organism Scientific: THERMUS AQUATICUS
    Organism Taxid: 271
    Synonym: GAPDH

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDOPQR
Biological Unit 1 (1x):     OPQR
Biological Unit 2 (1x): ABCD    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1NAD8Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN O:6 , PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASP O:32 , LEU O:33 , LYS O:77 , SER O:95 , THR O:96 , GLY O:97 , THR O:119 , ALA O:120 , CYS O:149 , ASN O:313 , TYR O:317BINDING SITE FOR RESIDUE NAD O 336
2AC2SOFTWAREASN P:6 , GLY P:7 , GLY P:9 , ARG P:10 , ILE P:11 , ASN P:31 , ASP P:32 , LEU P:33 , SER P:95 , THR P:96 , GLY P:97 , THR P:119 , ALA P:120 , CYS P:149 , ASN P:180 , ASN P:313 , TYR P:317 , LEU Q:187BINDING SITE FOR RESIDUE NAD P 336
3AC3SOFTWAREASN Q:6 , GLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , ASP Q:32 , LEU Q:33 , LYS Q:77 , SER Q:95 , GLY Q:97 , PHE Q:99 , THR Q:119 , ALA Q:120 , CYS Q:149 , THR Q:179 , ASN Q:180 , ASN Q:313 , TYR Q:317BINDING SITE FOR RESIDUE NAD Q 336
4AC4SOFTWARELEU O:187 , ASN R:6 , GLY R:7 , GLY R:9 , ARG R:10 , ILE R:11 , ASP R:32 , LEU R:33 , SER R:95 , THR R:96 , GLY R:97 , THR R:119 , ALA R:120 , ASN R:180 , ASN R:313 , TYR R:317BINDING SITE FOR RESIDUE NAD R 336
5AC5SOFTWAREASN A:6 , PHE A:8 , GLY A:9 , ARG A:10 , ILE A:11 , ASP A:32 , LEU A:33 , LYS A:77 , SER A:95 , THR A:96 , GLY A:97 , THR A:119 , ALA A:120 , CYS A:149 , ASN A:313 , TYR A:317BINDING SITE FOR RESIDUE NAD A 336
6AC6SOFTWAREASN B:6 , GLY B:7 , GLY B:9 , ARG B:10 , ILE B:11 , ASN B:31 , ASP B:32 , LEU B:33 , SER B:95 , THR B:96 , GLY B:97 , THR B:119 , ALA B:120 , CYS B:149 , ASN B:180 , ASN B:313 , TYR B:317 , LEU C:187BINDING SITE FOR RESIDUE NAD B 336
7AC7SOFTWAREASN C:6 , GLY C:7 , GLY C:9 , ARG C:10 , ILE C:11 , ASN C:31 , ASP C:32 , LEU C:33 , LYS C:77 , SER C:95 , GLY C:97 , PHE C:99 , THR C:119 , ALA C:120 , CYS C:149 , THR C:179 , ASN C:180 , ASN C:313 , TYR C:317BINDING SITE FOR RESIDUE NAD C 336
8AC8SOFTWARELEU A:187 , ASN D:6 , GLY D:7 , GLY D:9 , ARG D:10 , ILE D:11 , ASP D:32 , LEU D:33 , SER D:95 , THR D:96 , GLY D:97 , THR D:119 , ALA D:120 , ASN D:180 , ASN D:313 , TYR D:317BINDING SITE FOR RESIDUE NAD D 336

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CER)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CER)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CER)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_THEAQ147-154
 
 
 
 
 
 
 		  8A:147-154
B:147-154
C:147-154
D:147-154
O:147-154
P:147-154
Q:147-154
R:147-154
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_THEAQ147-154
 
 
 
 
 
 
 		  4-
-
-
-
O:147-154
P:147-154
Q:147-154
R:147-154
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_THEAQ147-154
 
 
 
 
 
 
 		  4A:147-154
B:147-154
C:147-154
D:147-154
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1CER)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cera1 A:1-148,A:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cera2 A:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cera1               SCOP domains
               CATH domains 1cerA01 A:1-147,A:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerA02 A:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerA01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh...eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh..hhhh.eeeeee.......hhhhhhhhhh...eeee................hhh.......eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee.........................eee...hhhhhhh..hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhh.......eeee.....hhhh......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer A    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain B from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cerb1 B:1-148,B:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cerb2 B:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cerb1               SCOP domains
               CATH domains 1cerB01 B:1-147,B:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerB02 B:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerB01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh...eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh...hhh.eeeeee.......hhhhhhhhh....eeee................hhh.......eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee....................hhh..eeee.....hhhh..hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhh......eeee.....hhhh......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer B    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain C from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cerc1 C:1-148,C:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cerc2 C:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cerc1               SCOP domains
               CATH domains 1cerC01 C:1-147,C:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerC02 C:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerC01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhh....eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh..hhhh.eeeeee.......hhhhhhhhhh...eeee................hhh.......eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee....................hhh..eee...hhhhhhhh.hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhh......eeee.....hhh.......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer C    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain D from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cerd1 D:1-148,D:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cerd2 D:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cerd1               SCOP domains
               CATH domains 1cerD01 D:1-147,D:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerD02 D:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerD01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh...eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh..hhhh.eeeeee.......hhhhhhhhh....eeee..........................eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee....................hhh..eeee....hhhhh..hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhh......eeee.....hhhh......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer D    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain O from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cero1 O:1-148,O:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cero2 O:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cero1               SCOP domains
               CATH domains 1cerO01 O:1-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerO02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerO01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh...eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh..hhhh.eeeeee.......hhhhhhhhhh...eeee................hhh.......eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee.........................eee...hhhhhhh..hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhh.......eeee.....hhhh......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer O    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain P from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cerp1 P:1-148,P:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cerp2 P:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cerp1               SCOP domains
               CATH domains 1cerP01 P:1-147,P:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerP02 P:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerP01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh...eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh...hhh.eeeeee.......hhhhhhhhh....eeee................hhh.......eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee....................hhh..eeee.....hhhh..hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhh......eeee.....hhhh......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer P    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain Q from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cerq1 Q:1-148,Q:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cerq2 Q:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cerq1               SCOP domains
               CATH domains 1cerQ01 Q:1-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerQ02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerQ01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhh....eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh..hhhh.eeeeee.......hhhhhhhhhh...eeee................hhh.......eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee....................hhh..eee...hhhhhhhh.hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhh......eeee.....hhh.......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer Q    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302                               


Chain R from PDB  Type:PROTEIN  Length:331
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 
           G3P_THEAQ      1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  331
               SCOP domains d1cerr1 R:1-148,R:313-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d1cerr2 R:149-312 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d1cerr1               SCOP domains
               CATH domains 1cerR01 R:1-147,R:314-333 NAD(P)-binding Rossmann-like Domain                                                                                      1cerR02 R:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                           1cerR01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh...eeeee....hhhhhhhhh...........eee...eeee..eeeeee....hhh..hhhh.eeeeee.......hhhhhhhhh....eeee..........................eee...hhhhhhhhhhhhhhhh..eeeeeeeeeee....................hhh..eeee....hhhhh..hhh...eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhh......eeee.....hhhh......eeeehhh.eee..eeeeeeee...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cer R    1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV  333
                                    10        20  ||    31  ||    42        52        62        72        82        92       102       112       122|      131       140       150       160       170       180       191       201       211       221       231       241       251       261       271       281       291       302       312       322       332 
                                                 23|       34|                                                                                   122A             138A                                               188|                                                                                                           300|                               
                                                  25        36                                                                                                                                                        190                                                                                                            302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)
(-)
Thermus aquaticus. Organism_taxid: 271. (3)
2a1cerA01A:1-147,A:314-333
2b1cerC01C:1-147,C:314-333
2c1cerD01D:1-147,D:314-333
2d1cerO01O:1-147,O:314-333
2e1cerP01P:1-147,P:314-333
2f1cerQ01Q:1-147,Q:314-333
2g1cerR01R:1-147,R:314-333
2h1cerB01B:1-147,B:314-333

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CER)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,O,P,Q,R   (G3P_THEAQ | P00361)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1cer
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G3P_THEAQ | P00361: 2g82

(-) Related Entries Specified in the PDB File

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