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(-) Description

Title :  HIGH RESOLUTION STRUCTURES OF THERMUS AQUATICUS GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: ROLE OF 220'S LOOP MOTION IN CATALYSIS
 
Authors :  J. L. Jenkins, R. Buencamino, J. J. Tanner
Date :  01 Mar 06  (Deposition) - 13 Mar 07  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D,O,P,Q,R
Biol. Unit 1:  O,P,Q,R  (1x)
Biol. Unit 2:  A,B,C,D  (1x)
Keywords :  Gapdh, G3Pdh, Glycolysis, Oxidoreductase, Nad, Rossmann Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Jenkins, R. Buencamino, J. J. Tanner
High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3-Phosphate Dehydrogenase: Role Of 220'S Loo Motion In Catalysis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: O, P, Q, R, A, B, C, D
    EC Number: 1.2.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBR322
    Expression System Strain: W3CG
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GAP
    Organism Scientific: THERMUS AQUATICUS
    Organism Taxid: 271
    Synonym: GAPDH

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDOPQR
Biological Unit 1 (1x):     OPQR
Biological Unit 2 (1x): ABCD    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 23)

Asymmetric Unit (6, 23)
No.NameCountTypeFull Name
1CSD8Mod. Amino Acid3-SULFINOALANINE
2GOL3Ligand/IonGLYCEROL
3IPA2Ligand/IonISOPROPYL ALCOHOL
4NA1Ligand/IonSODIUM ION
5NAD8Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
6PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2GOL2Ligand/IonGLYCEROL
3IPA1Ligand/IonISOPROPYL ALCOHOL
4NA-1Ligand/IonSODIUM ION
5NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
6PGE-1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (5, 11)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2GOL1Ligand/IonGLYCEROL
3IPA1Ligand/IonISOPROPYL ALCOHOL
4NA-1Ligand/IonSODIUM ION
5NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
6PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPGE C:1700 , HOH C:1853 , HOH C:1996 , HOH Q:3563 , HOH Q:3699BINDING SITE FOR RESIDUE NA C 1600
02AC2SOFTWAREASN O:6 , GLY O:7 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:30 , ASP O:31 , LEU O:32 , LYS O:75 , SER O:93 , THR O:94 , GLY O:95 , PHE O:97 , THR O:117 , ALA O:118 , CSD O:149 , ASN O:180 , ASN O:311 , TYR O:315 , HOH O:341 , HOH O:355 , HOH O:368 , HOH O:377 , HOH O:384 , HOH O:424 , HOH O:431 , HOH O:446 , HOH O:469 , HOH O:479 , HOH O:521 , LEU R:187 , HOH R:3525BINDING SITE FOR RESIDUE NAD O 336
03AC3SOFTWAREASN P:6 , GLY P:7 , GLY P:9 , ARG P:10 , ILE P:11 , ASN P:30 , ASP P:31 , LEU P:32 , LYS P:75 , SER P:93 , THR P:94 , GLY P:95 , PHE P:97 , THR P:117 , ALA P:118 , CSD P:149 , ASN P:180 , ASN P:311 , TYR P:315 , HOH P:337 , HOH P:343 , HOH P:351 , HOH P:361 , HOH P:369 , HOH P:396 , HOH P:404 , HOH P:411 , HOH P:417 , HOH P:422 , HOH P:455 , HOH P:476 , LEU Q:187 , HOH Q:3520BINDING SITE FOR RESIDUE NAD P 336
04AC4SOFTWARELEU P:187 , HOH P:339 , ASN Q:6 , GLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:30 , ASP Q:31 , LEU Q:32 , LYS Q:75 , SER Q:93 , THR Q:94 , GLY Q:95 , PHE Q:97 , THR Q:117 , ALA Q:118 , CSD Q:149 , ASN Q:180 , ASN Q:311 , TYR Q:315 , HOH Q:3504 , HOH Q:3508 , HOH Q:3522 , HOH Q:3541 , HOH Q:3554 , HOH Q:3590 , HOH Q:3601 , HOH Q:3603 , HOH Q:3619 , HOH Q:3631 , HOH Q:3667 , HOH Q:3681 , HOH Q:3688BINDING SITE FOR RESIDUE NAD Q 336
05AC5SOFTWARELEU O:187 , HOH O:347 , ASN R:6 , GLY R:7 , GLY R:9 , ARG R:10 , ILE R:11 , ASN R:30 , ASP R:31 , LEU R:32 , LYS R:75 , SER R:93 , THR R:94 , GLY R:95 , PHE R:97 , THR R:117 , ALA R:118 , CSD R:149 , ASN R:180 , ASN R:311 , TYR R:315 , HOH R:3504 , HOH R:3505 , HOH R:3508 , HOH R:3544 , HOH R:3548 , HOH R:3573 , HOH R:3593 , HOH R:3599 , HOH R:3607 , HOH R:3653 , HOH R:3666 , HOH R:3672BINDING SITE FOR RESIDUE NAD R 336
06AC6SOFTWAREASN A:6 , GLY A:7 , GLY A:9 , ARG A:10 , ILE A:11 , ASP A:31 , LEU A:32 , LYS A:75 , SER A:93 , THR A:94 , GLY A:95 , PHE A:97 , THR A:117 , ALA A:118 , CSD A:149 , ASN A:180 , ASN A:311 , TYR A:315 , HOH A:339 , HOH A:345 , HOH A:352 , HOH A:365 , HOH A:404 , HOH A:429 , HOH A:465 , HOH A:466 , HOH A:487 , HOH A:501 , HOH A:507 , LEU D:187 , HOH D:3519BINDING SITE FOR RESIDUE NAD A 336
07AC7SOFTWAREASN B:6 , GLY B:7 , GLY B:9 , ARG B:10 , ILE B:11 , ASP B:31 , LEU B:32 , LYS B:75 , SER B:93 , THR B:94 , GLY B:95 , PHE B:97 , THR B:117 , ALA B:118 , CSD B:149 , ASN B:180 , ASN B:311 , TYR B:315 , HOH B:340 , HOH B:341 , HOH B:356 , HOH B:366 , HOH B:370 , HOH B:377 , HOH B:395 , HOH B:409 , HOH B:410 , HOH B:415 , HOH B:449 , HOH B:474 , LEU C:187 , HOH C:1824BINDING SITE FOR RESIDUE NAD B 336
08AC8SOFTWARELEU B:187 , HOH B:338 , ASN C:6 , GLY C:7 , GLY C:9 , ARG C:10 , ILE C:11 , ASN C:30 , ASP C:31 , LEU C:32 , LYS C:75 , SER C:93 , THR C:94 , GLY C:95 , PHE C:97 , THR C:117 , ALA C:118 , CSD C:149 , ASN C:180 , ASN C:311 , TYR C:315 , HOH C:1802 , HOH C:1803 , HOH C:1815 , HOH C:1833 , HOH C:1847 , HOH C:1895 , HOH C:1917 , HOH C:1918 , HOH C:1945 , HOH C:1961 , HOH C:1994BINDING SITE FOR RESIDUE NAD C 336
09AC9SOFTWARELEU A:187 , HOH A:346 , ASN D:6 , GLY D:7 , GLY D:9 , ARG D:10 , ILE D:11 , ASP D:31 , LEU D:32 , LYS D:75 , SER D:93 , THR D:94 , GLY D:95 , PHE D:97 , THR D:117 , ALA D:118 , CSD D:149 , ASN D:180 , ASN D:311 , TYR D:315 , HOH D:3509 , HOH D:3517 , HOH D:3530 , HOH D:3536 , HOH D:3547 , HOH D:3564 , HOH D:3579 , HOH D:3590 , HOH D:3595 , HOH D:3650BINDING SITE FOR RESIDUE NAD D 336
10BC1SOFTWAREASP C:65 , NA C:1600 , HOH C:1853 , HOH C:1996 , HOH C:1998 , ASP Q:65 , HOH Q:3563 , HOH Q:3699 , HOH Q:3722BINDING SITE FOR RESIDUE PGE C 1700
11BC2SOFTWAREHOH C:1862 , HOH Q:3736 , GLY R:222BINDING SITE FOR RESIDUE IPA C 1800
12BC3SOFTWAREGLY D:222 , GLU Q:248 , HOH Q:3546 , HOH Q:3736BINDING SITE FOR RESIDUE IPA Q 1801
13BC4SOFTWAREGLU Q:276 , LYS Q:294 , LEU Q:295 , ARG R:193 , THR R:206 , HOH R:3623BINDING SITE FOR RESIDUE GOL R 3502
14BC5SOFTWAREARG Q:193 , THR Q:206 , GLU R:276 , LYS R:294BINDING SITE FOR RESIDUE GOL Q 3503
15BC6SOFTWAREGLU C:276 , LEU C:295 , ARG D:193 , THR D:205 , THR D:206 , MET D:227 , HOH D:3637BINDING SITE FOR RESIDUE GOL D 3504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2G82)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2G82)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2G82)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_THEAQ147-154
 
 
 
 
 
 
 		  8A:147-154
B:147-154
C:147-154
D:147-154
O:147-154
P:147-154
Q:147-154
R:147-154
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_THEAQ147-154
 
 
 
 
 
 
 		  4-
-
-
-
O:147-154
P:147-154
Q:147-154
R:147-154
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_THEAQ147-154
 
 
 
 
 
 
 		  4A:147-154
B:147-154
C:147-154
D:147-154
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2G82)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82a1 A:1-148,A:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82a2 A:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82a1              SCOP domains
               CATH domains 2g82A01 A:1-147,A:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82A02 A:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82A01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh.hhhh.eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 A   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82b1 B:1-148,B:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82b2 B:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82b1              SCOP domains
               CATH domains 2g82B01 B:1-147,B:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82B02 B:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82B01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh......eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 B   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82c1 C:1-148,C:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82c2 C:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82c1              SCOP domains
               CATH domains 2g82C01 C:1-147,C:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82C02 C:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82C01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh......eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 C   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82d1 D:1-148,D:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82d2 D:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82d1              SCOP domains
               CATH domains 2g82D01 D:1-147,D:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82D02 D:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82D01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh......eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 D   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain O from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82o1 O:1-148,O:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82o2 O:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82o1              SCOP domains
               CATH domains 2g82O01 O:1-147,O:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82O02 O:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82O01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh......eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 O   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain P from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82p1 P:1-148,P:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82p2 P:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82p1              SCOP domains
               CATH domains 2g82P01 P:1-147,P:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82P02 P:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82P01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh.hhhh.eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 P   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain Q from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82q1 Q:1-148,Q:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82q2 Q:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82q1              SCOP domains
               CATH domains 2g82Q01 Q:1-147,Q:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82Q02 Q:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82Q01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh......eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 Q   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD                                                                                                                                                                                 


Chain R from PDB  Type:PROTEIN  Length:330
 aligned with G3P_THEAQ | P00361 from UniProtKB/Swiss-Prot  Length:331

    Alignment length:330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
            G3P_THEAQ     1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
               SCOP domains d2g82r1 R:1-148,R:311-330 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                          d2g82r2 R:149-310 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2g82r1              SCOP domains
               CATH domains 2g82R01 R:1-147,R:312-330 NAD(P)-binding Rossmann-like Domain                                                                                      2g82R02 R:148-311 Dihydrodipicolinate Reductase; domain 2                                                                                                           2g82R01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh..........eee...eeee..eeeeee...hhhhh.hhhh.eeeeee......hhhhhhhhhhh...eeee........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee..eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2g82 R   1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNAScTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKG 330
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                                                                                                                              149-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)
(-)
Thermus aquaticus. Organism_taxid: 271. (3)
2a2g82A01A:1-147,A:312-330
2b2g82B01B:1-147,B:312-330
2c2g82C01C:1-147,C:312-330
2d2g82D01D:1-147,D:312-330
2e2g82O01O:1-147,O:312-330
2f2g82P01P:1-147,P:312-330
2g2g82Q01Q:1-147,Q:312-330
2h2g82R01R:1-147,R:312-330

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2G82)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,O,P,Q,R   (G3P_THEAQ | P00361)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2g82
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  G3P_THEAQ | P00361
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  1.2.1.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G3P_THEAQ | P00361: 1cer

(-) Related Entries Specified in the PDB File

1cer THE SAME PROTEIN AT A LOWER RESOLUTION.