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1CER
Biol. Unit 1
Info
Asym.Unit (416 KB)
Biol.Unit 1 (206 KB)
Biol.Unit 2 (208 KB)
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Title
:
DETERMINANTS OF ENZYME THERMOSTABILITY OBSERVED IN THE MOLECULAR STRUCTURE OF THERMUS AQUATICUS D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 2.5 ANGSTROMS RESOLUTION
Authors
:
J. J. Tanner, R. M. Hecht, K. L. Krause
Date
:
11 Nov 95 (Deposition) - 08 Mar 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,O,P,Q,R
Biol. Unit 1: O,P,Q,R (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Glycolysis, Oxidoreductase, Nad, Oxidoreductase (Aldehyde(D)-Nad(A))
(Keyword Search:
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Reference
:
J. J. Tanner, R. M. Hecht, K. L. Krause
Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde-3-Phosphate Dehydrogenase At 25 Angstroms Resolution.
Biochemistry V. 35 2597 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
1e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
1f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
1g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
1h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN O:6 , PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASP O:32 , LEU O:33 , LYS O:77 , SER O:95 , THR O:96 , GLY O:97 , THR O:119 , ALA O:120 , CYS O:149 , ASN O:313 , TYR O:317
BINDING SITE FOR RESIDUE NAD O 336
2
AC2
SOFTWARE
ASN P:6 , GLY P:7 , GLY P:9 , ARG P:10 , ILE P:11 , ASN P:31 , ASP P:32 , LEU P:33 , SER P:95 , THR P:96 , GLY P:97 , THR P:119 , ALA P:120 , CYS P:149 , ASN P:180 , ASN P:313 , TYR P:317 , LEU Q:187
BINDING SITE FOR RESIDUE NAD P 336
3
AC3
SOFTWARE
ASN Q:6 , GLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , ASP Q:32 , LEU Q:33 , LYS Q:77 , SER Q:95 , GLY Q:97 , PHE Q:99 , THR Q:119 , ALA Q:120 , CYS Q:149 , THR Q:179 , ASN Q:180 , ASN Q:313 , TYR Q:317
BINDING SITE FOR RESIDUE NAD Q 336
4
AC4
SOFTWARE
LEU O:187 , ASN R:6 , GLY R:7 , GLY R:9 , ARG R:10 , ILE R:11 , ASP R:32 , LEU R:33 , SER R:95 , THR R:96 , GLY R:97 , THR R:119 , ALA R:120 , ASN R:180 , ASN R:313 , TYR R:317
BINDING SITE FOR RESIDUE NAD R 336
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (O:147-154,P:147-154,Q:147-154,R:14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3P_THEAQ
147-154
4
-
-
-
-
O:147-154
P:147-154
Q:147-154
R:147-154
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1cera2 (A:149-312)
1b: SCOP_d1cerc2 (C:149-312)
1c: SCOP_d1cerd2 (D:149-312)
1d: SCOP_d1cero2 (O:149-312)
1e: SCOP_d1cerp2 (P:149-312)
1f: SCOP_d1cerq2 (Q:149-312)
1g: SCOP_d1cerr2 (R:149-312)
1h: SCOP_d1cerb2 (B:149-312)
2a: SCOP_d1cera1 (A:1-148,A:313-333)
2b: SCOP_d1cerc1 (C:1-148,C:313-333)
2c: SCOP_d1cerd1 (D:1-148,D:313-333)
2d: SCOP_d1cero1 (O:1-148,O:313-333)
2e: SCOP_d1cerp1 (P:1-148,P:313-333)
2f: SCOP_d1cerq1 (Q:1-148,Q:313-333)
2g: SCOP_d1cerr1 (R:1-148,R:313-333)
2h: SCOP_d1cerb1 (B:1-148,B:313-333)
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Classes
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)
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Thermus aquaticus [TaxId: 271]
(2)
1a
d1cera2
A:149-312
1b
d1cerc2
C:149-312
1c
d1cerd2
D:149-312
1d
d1cero2
O:149-312
1e
d1cerp2
P:149-312
1f
d1cerq2
Q:149-312
1g
d1cerr2
R:149-312
1h
d1cerb2
B:149-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Thermus aquaticus [TaxId: 271]
(2)
2a
d1cera1
A:1-148,A:313-333
2b
d1cerc1
C:1-148,C:313-333
2c
d1cerd1
D:1-148,D:313-333
2d
d1cero1
O:1-148,O:313-333
2e
d1cerp1
P:1-148,P:313-333
2f
d1cerq1
Q:1-148,Q:313-333
2g
d1cerr1
R:1-148,R:313-333
2h
d1cerb1
B:1-148,B:313-333
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1cerA02 (A:148-313)
1b: CATH_1cerC02 (C:148-313)
1c: CATH_1cerD02 (D:148-313)
1d: CATH_1cerO02 (O:148-313)
1e: CATH_1cerP02 (P:148-313)
1f: CATH_1cerQ02 (Q:148-313)
1g: CATH_1cerR02 (R:148-313)
1h: CATH_1cerB02 (B:148-313)
2a: CATH_1cerA01 (A:1-147,A:314-333)
2b: CATH_1cerC01 (C:1-147,C:314-333)
2c: CATH_1cerD01 (D:1-147,D:314-333)
2d: CATH_1cerO01 (O:1-147,O:314-333)
2e: CATH_1cerP01 (P:1-147,P:314-333)
2f: CATH_1cerQ01 (Q:1-147,Q:314-333)
2g: CATH_1cerR01 (R:1-147,R:314-333)
2h: CATH_1cerB01 (B:1-147,B:314-333)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Thermus aquaticus. Organism_taxid: 271.
(2)
1a
1cerA02
A:148-313
1b
1cerC02
C:148-313
1c
1cerD02
D:148-313
1d
1cerO02
O:148-313
1e
1cerP02
P:148-313
1f
1cerQ02
Q:148-313
1g
1cerR02
R:148-313
1h
1cerB02
B:148-313
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermus aquaticus. Organism_taxid: 271.
(3)
2a
1cerA01
A:1-147,A:314-333
2b
1cerC01
C:1-147,C:314-333
2c
1cerD01
D:1-147,D:314-333
2d
1cerO01
O:1-147,O:314-333
2e
1cerP01
P:1-147,P:314-333
2f
1cerQ01
Q:1-147,Q:314-333
2g
1cerR01
R:1-147,R:314-333
2h
1cerB01
B:1-147,B:314-333
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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