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(-) Description

Title :  CRYSTAL STRUCTURE OF A THERMOPHILIC ALCOHOL DEHYDROGENASE SUBSTRATE COMPLEX FROM THERMOANAEROBACTER BROCKII
 
Authors :  C. Li, J. Heatwole, S. Soelaiman, M. Shoham
Date :  09 Oct 98  (Deposition) - 18 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Thermophilic Alcohol Dehydrogenase, Crystal Structure, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Li, J. Heatwole, S. Soelaiman, M. Shoham
Crystal Structure Of A Thermophilic Alcohol Dehydrogenase Substrate Complex Suggests Determinants Of Substrate Specificity And Thermostability.
Proteins V. 37 619 1999 (for further references see the PDB file header)

(-) Compounds

Molecule 1 - NADP-DEPENDENT ALCOHOL DEHYDROGENASE
    ChainsA, B, C, D
    EC Number1.1.1.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentNUCLEOTIDE-BINDING DOMAIN, CATALYTIC DOMAIN
    Organism ScientificTHERMOANAEROBACTER BROCKII
    Organism Taxid29323

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MG4Ligand/IonMAGNESIUM ION
3SBT4Ligand/Ion2-BUTANOL
4ZN4Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:37 , THR A:38 , LYS A:346BINDING SITE FOR RESIDUE ZN A 354
02AC2SOFTWAREARG A:193 , LYS A:234BINDING SITE FOR RESIDUE CL A 355
03AC3SOFTWAREASP A:307 , HOH A:504BINDING SITE FOR RESIDUE MG A 356
04AC4SOFTWARECYS B:37 , THR B:38 , GLU B:60 , LYS B:346BINDING SITE FOR RESIDUE ZN B 354
05AC5SOFTWAREARG B:193 , LYS B:234BINDING SITE FOR RESIDUE CL B 355
06AC6SOFTWAREASP B:307BINDING SITE FOR RESIDUE MG B 356
07AC7SOFTWAREPRO C:36 , CYS C:37 , THR C:38 , GLU C:60 , LYS C:346BINDING SITE FOR RESIDUE ZN C 354
08AC8SOFTWAREHOH A:504 , ARG C:193BINDING SITE FOR RESIDUE CL C 355
09AC9SOFTWAREASP C:307BINDING SITE FOR RESIDUE MG C 356
10BC1SOFTWARECYS D:37 , THR D:38BINDING SITE FOR RESIDUE ZN D 354
11BC2SOFTWAREARG D:193BINDING SITE FOR RESIDUE CL D 355
12BC3SOFTWAREASP D:307BINDING SITE FOR RESIDUE MG D 356
13BC4SOFTWAREASP A:150BINDING SITE FOR RESIDUE SBT A 353
14BC5SOFTWAREHIS B:59 , ASP B:150BINDING SITE FOR RESIDUE SBT B 353
15BC6SOFTWAREASP C:150BINDING SITE FOR RESIDUE SBT C 353
16BC7SOFTWAREHIS D:59 , ASP D:150BINDING SITE FOR RESIDUE SBT D 353

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BXZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BXZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BXZ)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_ZINCPS00059 Zinc-containing alcohol dehydrogenases signature.ADH_THEBR58-72
 
 
 
  4A:58-72
B:58-72
C:58-72
D:58-72

(-) Exons   (0, 0)

(no "Exon" information available for 1BXZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:352
 aligned with ADH_THEBR | P14941 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
            ADH_THEBR     1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
               SCOP domains d1bxza1 A:1-139,A:314-352 Bacterial secondary alcohol dehydrogenase                                                                        d1bxza2 A:140-313 Bacterial secondary alcohol dehydrogenase                                                                                                                   d1bxza1 A:1-139,A:314-352               SCOP domains
               CATH domains 1bxzA01 A:1-161,A:293-352 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                  1bxzA02 A:162-292 NAD(P)-binding Rossmann-like Domain                                                                              1bxzA01 A:1-161,A:293-352                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..........eeeee.eee..hhhhhhhh..............eeeeeeeee...........eeee.........hhhhh..hhh.....................eee..hhhheee......hhhhhh...hhhhhhhhhhh........eeee...hhhhhhhhhhhh.....eeee...hhhhhhhhhh...eee.hhh..hhhhhhhh.......eeee....hhhhhhhhhh.....eeee........................eeee......hhhhhhhhhhhh.....hhhheeeeee.hhhhhhhhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxz A   1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  

Chain B from PDB  Type:PROTEIN  Length:352
 aligned with ADH_THEBR | P14941 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
            ADH_THEBR     1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
               SCOP domains d1bxzb1 B:1-139,B:314-352 Bacterial secondary alcohol dehydrogenase                                                                        d1bxzb2 B:140-313 Bacterial secondary alcohol dehydrogenase                                                                                                                   d1bxzb1 B:1-139,B:314-352               SCOP domains
               CATH domains 1bxzB01 B:1-161,B:293-352 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                  1bxzB02 B:162-292 NAD(P)-binding Rossmann-like Domain                                                                              1bxzB01 B:1-161,B:293-352                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..........eeeee.eee..hhhhhhhh..............eeeeeeeee...........eeee.........hhhh...hhh.....................eee..hhhheee......hhhhhh...hhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh....eeee...hhhhhhhhh....eee.hhh..hhhhhhhh.......eeee....hhhhhhhhhh.....eeee........................eeee......hhhhhhhhhhhh.....hhhheeeeee.hhhhhhhhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxz B   1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  

Chain C from PDB  Type:PROTEIN  Length:352
 aligned with ADH_THEBR | P14941 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
            ADH_THEBR     1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
               SCOP domains d1bxzc1 C:1-139,C:314-352 Bacterial secondary alcohol dehydrogenase                                                                        d1bxzc2 C:140-313 Bacterial secondary alcohol dehydrogenase                                                                                                                   d1bxzc1 C:1-139,C:314-352               SCOP domains
               CATH domains 1bxzC01 C:1-161,C:293-352 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                  1bxzC02 C:162-292 NAD(P)-binding Rossmann-like Domain                                                                              1bxzC01 C:1-161,C:293-352                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..........eeeee.eee..hhhhhhhh..............eeeeeeeee...........eeee..........hhhh..hhh.....................eee..hhhheee......hhhhhh...hhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh....eeee...hhhhhhhhh....eee.hhh..hhhhhhhh.......eeee....hhhhhhhhhh.....eeee..............hhh.......eeee......hhhhhhhhhhhh.....hhhheeeeee.hhhhhhhhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxz C   1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  

Chain D from PDB  Type:PROTEIN  Length:352
 aligned with ADH_THEBR | P14941 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
            ADH_THEBR     1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
               SCOP domains d1bxzd1 D:1-139,D:314-352 Bacterial secondary alcohol dehydrogenase                                                                        d1bxzd2 D:140-313 Bacterial secondary alcohol dehydrogenase                                                                                                                   d1bxzd1 D:1-139,D:314-352               SCOP domains
               CATH domains 1bxzD01 D:1-161,D:293-352 Medium-chain alcohol dehydrogenases, catalytic domain                                                                                  1bxzD02 D:162-292 NAD(P)-binding Rossmann-like Domain                                                                              1bxzD01 D:1-161,D:293-352                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..........eeeee.eee..hhhhhhhh..............eeeeeeeee...........eeee..........hhhh..hhh.....................eee..hhhheee......hhhhhh...hhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh....eeee...hhhhhhhhhh...eee.hhh..hhhhhhhh.......eeee......hhhhhhhh.....eeee........................eeee.....hhhhhhhhhhhhh.....hhhheeeeee.hhhhhhhhhhhh.......eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------ADH_ZINC       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bxz D   1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BXZ)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (ADH_THEBR | P14941)
molecular function
    GO:0050009    isopropanol dehydrogenase (NADP+) activity    Catalysis of the reaction: NADP(+) + propan-2-ol = acetone + H(+) + NADPH.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADH_THEBR | P149411ykf 2nvb 3fpc 3fpl 3fsr 3ftn

(-) Related Entries Specified in the PDB File

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