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Title :   CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE OF THE COFACTOR BINDING DOMAIN RES 153-295 OF C. BEIJERINCKII ADH BY T. BROCKII ADH

Authors :   F. Felix, E. Goihberg, L. Shimon, Y. Burstein

Date :   05 Jan 09 (Deposition) - 19 Jan 10 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Oxydoreductase, Bacterial Alcohol Dehydrogenase, Domain Exchange, Chimera, Metal-Binding, Nadp, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Goihberg, M. Peretz, S. Tel-Or, O. Dym, L. Shimon, F. Frolow, Y. Burstein
Biochemical And Structural Properties Of Chimeras Constructed By Exchange Of Cofactor-Binding Domains In Alcohol Dehydrogenases From Thermophilic And Mesophilic Microorganisms
Biochemistry V. 49 1943 2010
PubMed-ID: 20102159 | Reference-DOI: 10.1021/BI901730X

Molecule 1 - NADP-DEPENDENT ALCOHOL DEHYDROGENASE
	Chains	:	A
	EC Number	:	1.1.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BS-P58
	Expression System Strain	:	TG-I
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ADH1, ADH1
	Organism Common	:	CLOSTRIDIUM MP, THERMOANAEROBIUM BROCKII
	Organism Scientific	:	CLOSTRIDIUM BEIJERINCKII, THERMOANAEROBACTER BROCKII
	Organism Taxid	:	1520, 29323
	Other Details	:	CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE OF THE COFACTOR BINDING DOMAIN RES 153-295 OF CLOSTRIDIUM BEIJERINCKII ADH BY THERMOANAEROBIUM BROCKII ADH
	Synonym	:	CBADH

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 6)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	CL	2	Ligand/Ion	CHLORIDE ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
5	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	CAC	4	Ligand/Ion	CACODYLATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
4	PGE	4	Ligand/Ion	TRIETHYLENE GLYCOL
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:37 , HIS A:59 , ASP A:150 , CAC A:356	BINDING SITE FOR RESIDUE ZN A 352
2	AC2	SOFTWARE	GLU A:94 , ALA A:97 , HOH A:367 , HOH A:448 , HOH A:707	BINDING SITE FOR RESIDUE CL A 353
3	AC3	SOFTWARE	PRO A:177 , VAL A:178	BINDING SITE FOR RESIDUE CL A 354
4	AC4	SOFTWARE	TYR A:25 , ARG A:91 , HOH A:746	BINDING SITE FOR RESIDUE EDO A 355
5	AC5	SOFTWARE	CYS A:37 , SER A:39 , HIS A:59 , CYS A:85 , ASP A:150 , THR A:154 , MET A:285 , ZN A:352 , HOH A:393 , HOH A:649	BINDING SITE FOR RESIDUE CAC A 356
6	AC6	SOFTWARE	MET A:106 , GLU A:224 , MET A:228 , LYS A:254 , LEU A:279 , GLU A:280 , LYS A:288 , HOH A:436 , HOH A:581 , HOH A:724	BINDING SITE FOR RESIDUE PGE A 357

(no "SS Bond" information available for 3FPL)

(no "Cis Peptide Bond" information available for 3FPL)

(no "SAP(SNP)/Variant" information available for 3FPL)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH_CLOBE	58-72	1	A:58-72
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH_THEBR	58-72	1	A:58-72

Biological Unit 1 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH_CLOBE	58-72	4	A:58-72
1	ADH_ZINC	PS00059	Zinc-containing alcohol dehydrogenases signature.	ADH_THEBR	58-72	4	A:58-72

(no "Exon" information available for 3FPL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:351
 aligned with ADH_CLOBE | P25984 from UniProtKB/Swiss-Prot  Length:351

    Alignment length:351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 
            ADH_CLOBE     1 MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAVVIL 351
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3fplA01 A:1-154,A:293-351 Medium-chain alcohol dehydrogenases, catalytic domain                                                                           3fplA02 A:155-292 NAD(P)-binding Rossmann-like Domain                                                                                     3fplA01 A:1-154,A:293-351                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..........eeeeeeee..hhhhhhhhhhh.......ee....eeeeeeee...........eeee........hhhhhh.hhhhh....................eee.hhhhhhee.....hhhhhhh..hhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhh..eeehhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhheeeeeeeee.............hhhhhhhh...eeee....hhhhhhhhhhhhhhh...hhhh.eeeeee...hhhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------ADH_ZINC       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpl A   1 MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAVVIL 351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Chain A from PDB  Type:PROTEIN  Length:351
 aligned with ADH_THEBR | P14941 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 
            ADH_THEBR     1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3fplA01 A:1-154,A:293-351 Medium-chain alcohol dehydrogenases, catalytic domain                                                                           3fplA02 A:155-292 NAD(P)-binding Rossmann-like Domain                                                                                     3fplA01 A:1-154,A:293-351                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..........eeeeeeee..hhhhhhhhhhh.......ee....eeeeeeee...........eeee........hhhhhh.hhhhh....................eee.hhhhhhee.....hhhhhhh..hhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhh..eeehhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhheeeeeeeee.............hhhhhhhh...eeee....hhhhhhhhhhhhhhh...hhhh.eeeeee...hhhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------ADH_ZINC       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fpl A   1 MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAVVIL 351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3FPL)

(no "Pfam Domain" information available for 3FPL)

Asymmetric Unit(hide GO term definitions)

Chain A (ADH_THEBR | P14941)

molecular function
	GO:0050009	isopropanol dehydrogenase (NADP+) activity	Catalysis of the reaction: NADP(+) + propan-2-ol = acetone + H(+) + NADPH.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A (ADH_CLOBE | P25984)

molecular function
	GO:0050009	isopropanol dehydrogenase (NADP+) activity	Catalysis of the reaction: NADP(+) + propan-2-ol = acetone + H(+) + NADPH.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3fpl)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	ADH_THEBR \| P14941
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	1.1.1.2
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UniProtKB/Swiss-Prot
	ADH_CLOBE \| P25984	:	1jqb 1kev 1ped 2b83 3fsr 3ftn
	ADH_THEBR \| P14941	:	1bxz 1ykf 2nvb 3fpc 3fsr 3ftn

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

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