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1BXZ
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A THERMOPHILIC ALCOHOL DEHYDROGENASE SUBSTRATE COMPLEX FROM THERMOANAEROBACTER BROCKII
Authors
:
C. Li, J. Heatwole, S. Soelaiman, M. Shoham
Date
:
09 Oct 98 (Deposition) - 18 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Thermophilic Alcohol Dehydrogenase, Crystal Structure, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Li, J. Heatwole, S. Soelaiman, M. Shoham
Crystal Structure Of A Thermophilic Alcohol Dehydrogenase Substrate Complex Suggests Determinants Of Substrate Specificity And Thermostability.
Proteins V. 37 619 1999
(for further references see the
PDB file header
)
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: 2-BUTANOL (SBTa)
3b: 2-BUTANOL (SBTb)
3c: 2-BUTANOL (SBTc)
3d: 2-BUTANOL (SBTd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
SBT
4
Ligand/Ion
2-BUTANOL
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:37 , THR A:38 , LYS A:346
BINDING SITE FOR RESIDUE ZN A 354
02
AC2
SOFTWARE
ARG A:193 , LYS A:234
BINDING SITE FOR RESIDUE CL A 355
03
AC3
SOFTWARE
ASP A:307 , HOH A:504
BINDING SITE FOR RESIDUE MG A 356
04
AC4
SOFTWARE
CYS B:37 , THR B:38 , GLU B:60 , LYS B:346
BINDING SITE FOR RESIDUE ZN B 354
05
AC5
SOFTWARE
ARG B:193 , LYS B:234
BINDING SITE FOR RESIDUE CL B 355
06
AC6
SOFTWARE
ASP B:307
BINDING SITE FOR RESIDUE MG B 356
07
AC7
SOFTWARE
PRO C:36 , CYS C:37 , THR C:38 , GLU C:60 , LYS C:346
BINDING SITE FOR RESIDUE ZN C 354
08
AC8
SOFTWARE
HOH A:504 , ARG C:193
BINDING SITE FOR RESIDUE CL C 355
09
AC9
SOFTWARE
ASP C:307
BINDING SITE FOR RESIDUE MG C 356
10
BC1
SOFTWARE
CYS D:37 , THR D:38
BINDING SITE FOR RESIDUE ZN D 354
11
BC2
SOFTWARE
ARG D:193
BINDING SITE FOR RESIDUE CL D 355
12
BC3
SOFTWARE
ASP D:307
BINDING SITE FOR RESIDUE MG D 356
13
BC4
SOFTWARE
ASP A:150
BINDING SITE FOR RESIDUE SBT A 353
14
BC5
SOFTWARE
HIS B:59 , ASP B:150
BINDING SITE FOR RESIDUE SBT B 353
15
BC6
SOFTWARE
ASP C:150
BINDING SITE FOR RESIDUE SBT C 353
16
BC7
SOFTWARE
HIS D:59 , ASP D:150
BINDING SITE FOR RESIDUE SBT D 353
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:58-72,B:58-72,C:58-72,D:58-72)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH_THEBR
58-72
4
A:58-72
B:58-72
C:58-72
D:58-72
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1bxza1 (A:1-139,A:314-352)
1b: SCOP_d1bxzc1 (C:1-139,C:314-352)
1c: SCOP_d1bxzd1 (D:1-139,D:314-352)
1d: SCOP_d1bxzb1 (B:1-139,B:314-352)
2a: SCOP_d1bxza2 (A:140-313)
2b: SCOP_d1bxzc2 (C:140-313)
2c: SCOP_d1bxzd2 (D:140-313)
2d: SCOP_d1bxzb2 (B:140-313)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Bacterial secondary alcohol dehydrogenase
(7)
Thermoanaerobacter brockii [TaxId: 29323]
(3)
1a
d1bxza1
A:1-139,A:314-352
1b
d1bxzc1
C:1-139,C:314-352
1c
d1bxzd1
D:1-139,D:314-352
1d
d1bxzb1
B:1-139,B:314-352
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Bacterial secondary alcohol dehydrogenase
(7)
Thermoanaerobacter brockii [TaxId: 29323]
(3)
2a
d1bxza2
A:140-313
2b
d1bxzc2
C:140-313
2c
d1bxzd2
D:140-313
2d
d1bxzb2
B:140-313
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1bxzA02 (A:162-292)
1b: CATH_1bxzB02 (B:162-292)
1c: CATH_1bxzC02 (C:162-292)
1d: CATH_1bxzD02 (D:162-292)
2a: CATH_1bxzA01 (A:1-161,A:293-352)
2b: CATH_1bxzB01 (B:1-161,B:293-352)
2c: CATH_1bxzC01 (C:1-161,C:293-352)
2d: CATH_1bxzD01 (D:1-161,D:293-352)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermoanaerobacter brockii. Organism_taxid: 29323.
(2)
1a
1bxzA02
A:162-292
1b
1bxzB02
B:162-292
1c
1bxzC02
C:162-292
1d
1bxzD02
D:162-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Thermoanaerobacter brockii. Organism_taxid: 29323.
(2)
2a
1bxzA01
A:1-161,A:293-352
2b
1bxzB01
B:1-161,B:293-352
2c
1bxzC01
C:1-161,C:293-352
2d
1bxzD01
D:1-161,D:293-352
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
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Asym.Unit (224 KB)
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