Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Biol.Unit 1 - manually
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Biological Unit 1
collapse expand < >
Image Biol.Unit 1 - manually
Biol.Unit 1 - manually  (Jmol Viewer)
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)

(-) Description

Title :  PROCAPSID OF BACTERIOPHAGE PHIX174
 
Authors :  M. G. Rossmann, T. Dokland
Date :  06 Jun 97  (Deposition) - 28 Jan 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  B,F,G,1,2,3,4
Biol. Unit 1:  B,F,G,1,2,3,4  (60x)
Keywords :  Complex (Virus Capsid Proteins), Bacteriophage, Procapsid, Scaffolding Protein, Chaperone, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Dokland, R. Mckenna, L. L. Ilag, B. R. Bowman, N. L. Incardona, B. A. Fane, M. G. Rossmann
Structure Of A Viral Procapsid With Molecular Scaffolding.
Nature V. 389 308 1997
PubMed-ID: 9305849  |  Reference-DOI: 10.1038/38537
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SCAFFOLDING PROTEIN GPD
    Chains: 1, 2, 3, 4
    Organism Scientific: ENTEROBACTERIA PHAGE PHIX174
    Organism Taxid: 10847
    Strain: C
 
Molecule 2 - CAPSID PROTEIN GPF
    Chains: F
    Organism Scientific: ENTEROBACTERIA PHAGE PHIX174
    Organism Taxid: 10847
    Strain: C
 
Molecule 3 - SPIKE PROTEIN GPG
    Chains: G
    Organism Scientific: ENTEROBACTERIA PHAGE PHIX174
    Organism Taxid: 10847
    Strain: C
 
Molecule 4 - SCAFFOLDING PROTEIN GPB
    Chains: B
    Organism Scientific: ENTEROBACTERIA PHAGE PHIX174
    Organism Taxid: 10847
    Strain: C

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : BFG1234
Biological Unit 1 (60x): BFG1234

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1AL0)

(-) Sites  (0, 0)

(no "Site" information available for 1AL0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AL0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1AL0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1AL0)

(-) Exons   (0, 0)

(no "Exon" information available for 1AL0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:143
 aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:143
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145   
          SCAFD_BPPHS     6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRA 148
               SCOP domains d1al01_ 1: Scaffolding protein gpD of bacteriophage procapsid                                                                                   SCOP domains
               CATH domains 1al0100 1:6-148 Procapsid Of Bacteriophage Phix174, Chain 1                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.......hhhhhhh.......hhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhh......hhhhhhh.....hhhhhh.......hhhhhhhhhhhhhh.........hhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1al0 1   6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRA 148
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145   


Chain 2 from PDB  Type:PROTEIN  Length:133
 aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:133
                                    15        25        35        45        55        65        75        85        95       105       115       125       135   
          SCAFD_BPPHS     6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDA 138
               SCOP domains d1al02_ 2: Scaffolding protein gpD of bacteriophage procapsid                                                                         SCOP domains
               CATH domains 1al0200 2:6-138 Procapsid Of Bacteriophage Phix174, Chain 1                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh.hhhhhhhhhhhhh......hhhhhhhh.........hhhhhhhhhhhhhhhhhhh........hhhhhhhhhh...hhhhhhhhhhh....................hhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1al0 2   6 EQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDA 138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135   


Chain 3 from PDB  Type:PROTEIN  Length:140
 aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:140
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144
          SCAFD_BPPHS     5 TEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQ 144
               SCOP domains d1al03_ 3: Scaffolding protein gpD of bacteriophage procapsid                                                                                SCOP domains
               CATH domains 1al0300 3:5-144 Procapsid Of Bacteriophage Phix174, Chain 1                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh.......hhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..hhhhhhhhhhh.....hhhhhh.......hhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1al0 3   5 TEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQ 144
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144


Chain 4 from PDB  Type:PROTEIN  Length:146
 aligned with SCAFD_BPPHS | P69486 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:146
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146      
          SCAFD_BPPHS     7 QSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM 152
               SCOP domains d1al04_ 4: Scaffolding protein gpD of bacteriophage procapsid                                                                                      SCOP domains
               CATH domains 1al0400 4:7-152 Procapsid Of Bacteriophage Phix174, Chain 1                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh..........hhhhhhh..........hhhhhhhhhhhhhhhhhhh........hhhhhhhhhh......hhhhhhhh..................hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1al0 4   7 QSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM 152
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146      


Chain B from PDB  Type:PROTEIN  Length:49
 aligned with SCAFB_BPPHS | P03633 from UniProtKB/Swiss-Prot  Length:120

    Alignment length:120
                                    10        20        30        40        50        60        70        80        90       100       110       120
          SCAFB_BPPHS     1 MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTYQAGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPAEFYRFHDAEVNTFGYF 120
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........-----------------------------------------------------------------------.......hhhhhh...................hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1al0 B   1 MEQLTKNQ-----------------------------------------------------------------------GATCDDKSAQIYARFDKNDWRIQPAEFYRFHDAEVNTFGYF 120
                                   | -         -         -         -         -         -         -        80        90       100       110       120
                                   8                                                                      80                                        


Chain F from PDB  Type:PROTEIN  Length:418
 aligned with CAPSD_BPPHS | P03641 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:418
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414        
          CAPSD_BPPHS     5 QTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRD 422
               SCOP domains d1al0f_ F: Microvirus capsid proteins                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1al0F00 F:4-421 Bacteriophage G4 Capsid Proteins Gpf, Gpg, Gpj, subunit 1                                                                                                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeeeeee.........eeee......eeeeeeee............eeeee..eeeehhhh....hhhhhhhhhh.....eee........hhh........eeehhhhhhhhhhhhhh.............hhh..hhhhh..................................hhhhhhhhhhhhhhhhhhh....hhhhhhhh.................eeeee......................eeeeee........eeee..eeeee.........hhhh.....hhhh...hhhhh....eeeehhh.........eeee...hhh.......................................hhh........eeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1al0 F   4 QTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRD 421
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413        


Chain G from PDB  Type:PROTEIN  Length:175
 aligned with G_BPPHS | P03643 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     
              G_BPPHS     1 MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK 175
               SCOP domains d1al0g_ G: Microvirus capsid proteins                                                                                                                                           SCOP domains
               CATH domains 1al0G00 G:1-175  [code=2.60.120.20, no name defined]                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eee.....................eeeeee..eee..eeeeeeeeee........eeee..eeeeee......eeeeeeeee...........eee....eee..eeeee..eeee........eeeeeeeeeeee..eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1al0 G   1 MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (3, 6)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AL0)

(-) Gene Ontology  (13, 19)

Asymmetric Unit(hide GO term definitions)
Chain 1,2,3,4   (SCAFD_BPPHS | P69486)
biological process
    GO:0046797    viral procapsid maturation    The refolding and structural rearrangements of individual capsid subunits to transition from the intermediate procapsid, to the more stable capsid structure.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.

Chain B   (SCAFB_BPPHS | P03633)
biological process
    GO:0019069    viral capsid assembly    The assembly of a virus capsid from its protein subunits.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0046729    viral procapsid    A stable empty viral capsid produced during the assembly of viruses.

Chain F   (CAPSD_BPPHS | P03641)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0039615    T=1 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=1 symmetry. The T=1 capsid is composed of 12 pentameric capsomeres.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain G   (G_BPPHS | P03643)
biological process
    GO:0019048    modulation by virus of host morphology or physiology    The process in which a virus effects a change in the structure or processes of its host organism.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1al0)
 
  Sites
(no "Sites" information available for 1al0)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1al0)
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1al0
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CAPSD_BPPHS | P03641
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  G_BPPHS | P03643
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  SCAFB_BPPHS | P03633
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  SCAFD_BPPHS | P69486
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CAPSD_BPPHS | P03641
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  G_BPPHS | P03643
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SCAFB_BPPHS | P03633
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SCAFD_BPPHS | P69486
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BPPHS | P03641: 1cd3 1kvp 1phx 2bpa
        G_BPPHS | P03643: 1cd3 1phx 2bpa
        SCAFB_BPPHS | P03633: 1cd3
        SCAFD_BPPHS | P69486: 1cd3 1m0f 1tx9

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1AL0)