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(-) Description

Title :  NMR STRUCTURE OF THE LANTIBIOTIC ACTAGARDINE
 
Authors :  N. Zimmermann, G. Jung
Date :  14 May 97  (Deposition) - 15 Oct 97  (Release) - 27 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
NMR Structure *:  A  (1x)
Keywords :  Antibiotic, Lantibiotic, Antimicrobial, Bacteriocin, Thioester, Transmembrane Pore (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Zimmermann, G. Jung
The Three-Dimensional Solution Structure Of The Lantibiotic Murein-Biosynthesis-Inhibitor Actagardine Determined By Nmr
Eur. J. Biochem. V. 246 809 1997
PubMed-ID: 9219543  |  Reference-DOI: 10.1111/J.1432-1033.1997.00809.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LANTIBIOTIC ACTAGARDINE
    Atcc31048, 31049
    ChainsA
    Organism ScientificACTINOPLANES LIGURIAE, ACTINOPLANES GARBADINENSIS
    Organism Taxid69484, 69485
    SynonymGARDIMYCIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (15x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

NMR Structure (2, 4)
No.NameCountTypeFull Name
1DAL1Mod. Amino AcidD-ALANINE
2DBB3Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID
NMR Structure * (2, 4)
No.NameCountTypeFull Name
1DAL1Mod. Amino AcidD-ALANINE
2DBB3Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1AJ1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AJ1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1AJ1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AJ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1AJ1)

(-) Exons   (0, 0)

(no "Exon" information available for 1AJ1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:19
 aligned with LANA_ACTLG | P56650 from UniProtKB/Swiss-Prot  Length:19

    Alignment length:19
                                    10         
            LANA_ACTLG    1 SSGWVCTLTIECGTVICAC 19
               SCOP domains d1aj1a_ A:          SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  1aj1 A  1 xSGWVCtLtIECGtVICAC 19
                            |     | 10   |     
                            |     7-DBB  |     
                            1-DAL   9-DBB|     
                                        14-DBB 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1AJ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AJ1)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (LANA_ACTLG | P56650)
molecular function
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.

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 Related Entries

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(-) Related Entries Specified in the PDB File

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2ktn SOLUTION STRUCTURE OF LCH-ALPHA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC SYSTEM LICHENICIDIN VK21 A1
2kto SOLUTION STRUCTURE OF LCH-BETA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC LICHENICIDIN VK21 A2