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(-) Description

Title :  STRUCTURE OF THE APO EEF2-ETA COMPLEX
 
Authors :  R. Joergensen, A. R. Merrill, S. P. Yates, V. E. Marquez, A. L. Schwan, T. Boesen, G. R. Andersen
Date :  10 May 05  (Deposition) - 24 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.07
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Elongation Factor, Toxin, Adp-Ribosylation, Biosynthetic Protein/Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Joergensen, A. R. Merrill, S. P. Yates, V. E. Marquez, A. L. Schwan, T. Boesen, G. R. Andersen
Exotoxin A-Eef2 Complex Structure Indicates Adp Ribosylation By Ribosome Mimicry.
Nature V. 436 979 2005
PubMed-ID: 16107839  |  Reference-DOI: 10.1038/NATURE03871
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ELONGATION FACTOR 2
    Chains: A, C, E
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: EF-2
 
Molecule 2 - EXOTOXIN A
    Chains: B, D, F
    EC Number: 2.4.2.36
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: NAD-DEPENDENT ADP-RIBOSYLTRANSFERASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1DDE3Mod. Amino Acid{3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H-IMIDAZOL-2-YL]-1-CARBAMOYL-PROPYL}-TRIMETHYL-AMMONIUM
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1DDE1Mod. Amino Acid{3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H-IMIDAZOL-2-YL]-1-CARBAMOYL-PROPYL}-TRIMETHYL-AMMONIUM
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1DDE1Mod. Amino Acid{3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H-IMIDAZOL-2-YL]-1-CARBAMOYL-PROPYL}-TRIMETHYL-AMMONIUM
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1DDE1Mod. Amino Acid{3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H-IMIDAZOL-2-YL]-1-CARBAMOYL-PROPYL}-TRIMETHYL-AMMONIUM

(-) Sites  (0, 0)

(no "Site" information available for 1ZM3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZM3)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:637 -Pro A:638
2Leu B:535 -Pro B:536
3Gly C:637 -Pro C:638
4Leu D:535 -Pro D:536
5Gly E:637 -Pro E:638
6Leu F:535 -Pro F:536

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZM3)

(-) PROSITE Motifs  (1, 3)

Asymmetric Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 
 		  3A:67-73
C:67-73
E:67-73
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 
 		  1A:67-73
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 
 		  1-
C:67-73
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 
 		  1-
-
E:67-73

(-) Exons   (1, 3)

Asymmetric Unit (1, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2YOR133W2YOR133W.1XV:575099-5776272529EF2_YEAST1-8428423A:2-842 (gaps)
C:2-842 (gaps)
E:2-842 (gaps)		841
841
841

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:823
 aligned with EF2_YEAST | P32324 from UniProtKB/Swiss-Prot  Length:842

    Alignment length:841
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
            EF2_YEAST     2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
               SCOP domains d1zm3a2 A:2-343 automated matches                                                                                                                                                                                                                                                                                                                     d1zm3a1 A:344-481 automated matches                                                                                                       d1zm3a4 A:482-560 automated matches                                            d1zm3a3 A:561-725 automated matches                                                                                                                                  d1zm3a5 A:726-842 automated matches                                                                                   SCOP domains
               CATH domains 1zm3A01 A:2-221,A:329-344 P-loop containing nuc                  leotide triphosphate hydrolases                                                                                                                            1zm3A02 A:222-328 Yeast translation eEF2 (G' domain)                                                       1zm3A01         1zm3A03 A:345-481 Translation factors                                                                                                    1zm3A04 A:482-562 Elongation Factor G (Translational Gtpase), domain 3           -----1zm3A05 A:568-721  [code=3.30.230.10, no name defined]                                                                                                    1zm3A06 A:722-842  [code=3.30.70.240, no name defined]                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.ee.------------------.......eeeeeee.hhhhhhhh.......eeeeeee....hhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhh..eeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.eeeee....eeehhhhhhhhh......hhhhhhhhh....ee......ee............hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.....hhhhhhhhh.......eeeeeeeee......eeeeeeeee.eee...eeeee...........eeeee..eeeeee..eeee..eee...eeeee.........eeee..................eeeeeee.hhhhhhhhhhhhhhhhhhh...eeee.....eeeee.hhhhhhhhhhhhhhh.....eee...ee..eeee.......eeee......eeeeeeee.hhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhheeee.......eeee.......hhhhhhhhhhhhhhhhhhh......ee..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeee..hhhhhhhhhh....eeeeeee.....eeeeeeeee.hhh.hhhhhhhhhh....eeeeeeeeeee.........hhhhhhhhhhhhhh.......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: A:2-842 (gaps) UniProt: 1-842 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 Transcript 1
                 1zm3 A   2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISA------------------GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIhRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
                                    11        21        31        41      |  -         -     |  71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
                                                                         48                 67                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     699-DDE                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:207
 aligned with TOXA_PSEAE | P11439 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:207
                                   433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       
           TOXA_PSEAE   424 EFLGDGGDISFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTGLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG 630
               SCOP domains d1zm3b_ B: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains 1zm3B00 B:399-605 Diphtheria Toxin, domain 1                                                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee..eee..hhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhh................eee..hhhhhhh................eeeeeeee.hhhh.eee......hhhhhhhhhhhhh........eeeee......eeeeehhhhhh..eeee..............hhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zm3 B 399 EFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG 605
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       


Chain C from PDB  Type:PROTEIN  Length:823
 aligned with EF2_YEAST | P32324 from UniProtKB/Swiss-Prot  Length:842

    Alignment length:841
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
            EF2_YEAST     2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
               SCOP domains d1zm3c2 C:2-343 automated matches                                                                                                                                                                                                                                                                                                                     d1zm3c1 C:344-481 automated matches                                                                                                       d1zm3c4 C:482-560 automated matches                                            d1zm3c3 C:561-725 automated matches                                                                                                                                  d1zm3c5 C:726-842 automated matches                                                                                   SCOP domains
               CATH domains 1zm3C01 C:2-221,C:329-344 P-loop containing nuc                  leotide triphosphate hydrolases                                                                                                                            1zm3C02 C:222-328 Yeast translation eEF2 (G' domain)                                                       1zm3C01         1zm3C03 C:345-481 Translation factors                                                                                                    1zm3C04 C:482-562 Elongation Factor G (Translational Gtpase), domain 3           -----1zm3C05 C:568-721  [code=3.30.230.10, no name defined]                                                                                                    1zm3C06 C:722-842  [code=3.30.70.240, no name defined]                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhh.ee.------------------.......eeeeeee.hhhhhhh........eeeeeee....hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhh..eeeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.eeeee....eeehhhhhhhhhhhh...hhhhhhhhh....ee......ee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhh.......eeeeeeeee......eeeeeeeee.eee...eeeee...........eeeee..eeeeee..eeee..eee...eeeee.........eeee..................ee..........hhhhhhhhhhhhhhh...eeeee...eeeee..hhhhhhhhhhhhhhh...........ee..eeee.......eeee......eeeeeeee.hhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhheeee.......eeeee......hhhhhhhhhhhhhhhhhhh......ee..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeee..hhhhhhhhhh....eeeeeee.....eeeeeeeee.hhh.hhhhhhhhhh.......eeeeeeee.........hhhhhhhhhhhhhh.......hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: C:2-842 (gaps) UniProt: 1-842 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 Transcript 1
                 1zm3 C   2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISA------------------GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIhRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
                                    11        21        31        41      |  -         -     |  71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
                                                                         48                 67                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     699-DDE                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:207
 aligned with TOXA_PSEAE | P11439 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:207
                                   433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       
           TOXA_PSEAE   424 EFLGDGGDISFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTGLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG 630
               SCOP domains d1zm3d_ D: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains 1zm3D00 D:399-605 Diphtheria Toxin, domain 1                                                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee..eee..hhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhh................eee..hhhhhhh................eeeeeeee.hhhh.eee......hhhhhhhhhhhhh........eeeee......eeeeehhhhhhh.eeee.....hhhhh....hhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zm3 D 399 EFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG 605
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       


Chain E from PDB  Type:PROTEIN  Length:823
 aligned with EF2_YEAST | P32324 from UniProtKB/Swiss-Prot  Length:842

    Alignment length:841
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
            EF2_YEAST     2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
               SCOP domains d1zm3e2 E:2-343 automated matches                                                                                                                                                                                                                                                                                                                     d1zm3e1 E:344-481 automated matches                                                                                                       d1zm3e4 E:482-560 automated matches                                            d1zm3e3 E:561-725 automated matches                                                                                                                                  d1zm3e5 E:726-842 automated matches                                                                                   SCOP domains
               CATH domains 1zm3E01 E:2-221,E:329-344 P-loop containing nuc                  leotide triphosphate hydrolases                                                                                                                            1zm3E02 E:222-328 Yeast translation eEF2 (G' domain)                                                       1zm3E01         1zm3E03 E:345-481 Translation factors                                                                                                    1zm3E04 E:482-562 Elongation Factor G (Translational Gtpase), domain 3           -----1zm3E05 E:568-721  [code=3.30.230.10, no name defined]                                                                                                    1zm3E06 E:722-842  [code=3.30.70.240, no name defined]                                                                    CATH domains
           Pfam domains (1) ---------------GTP_EFTU-1zm3E04 E:17-344                                                                                                                                                                                                                                                                                                               ------------------------------------------------GTP_EFTU_D2-1zm3E10 E:393-470                                                 -------------------------------------------------------------------------------------------------------------------------------------EFG_IV-1zm3E07 E:604-721                                                                                              -EFG_C-1zm3E01 E:723-811                                                                  ------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------GTP_EFTU-1zm3E05 E:17-344                                                                                                                                                                                                                                                                                                               ------------------------------------------------GTP_EFTU_D2-1zm3E11 E:393-470                                                 -------------------------------------------------------------------------------------------------------------------------------------EFG_IV-1zm3E08 E:604-721                                                                                              -EFG_C-1zm3E02 E:723-811                                                                  ------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------GTP_EFTU-1zm3E06 E:17-344                                                                                                                                                                                                                                                                                                               ------------------------------------------------GTP_EFTU_D2-1zm3E12 E:393-470                                                 -------------------------------------------------------------------------------------------------------------------------------------EFG_IV-1zm3E09 E:604-721                                                                                              -EFG_C-1zm3E03 E:723-811                                                                  ------------------------------- Pfam domains (3)
         Sec.struct. author .eehhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.ee.------------------.......eeeeeee...hhhhhh.......eeeeeee....hhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhh..eeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.eeeee....eeee..hhhhhhhhhh..hhhhhhhhhh...eee....eee............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.....hhhhhhhhh.......eeeeeeeee......eeeeeeeee.eee...eeeee..............ee..eeeeee..eeee..eee...eeeee.........eeee..................eeeee......hhhhhhhhhhhhhhhh...eeee.....eeeee.hhhhhhhhhhhhhhh...........ee..eeee.......eeee......eeeeeeee.hhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhh.eeee.......eeeee......hhhhhhhhhhhhhhhhhhh......ee..eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeee..hhhhhhhhhh....eeeeeee.....eeeeeeeee.hhh.hhhhhhhhhh....eeeeeeeeeee.........hhhhhhhhhhhhhh.......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: E:2-842 (gaps) UniProt: 1-842 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 Transcript 1
                 1zm3 E   2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISA------------------GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIhRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
                                    11        21        31        41      |  -         -     |  71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
                                                                         48                 67                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     699-DDE                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:207
 aligned with TOXA_PSEAE | P11439 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:207
                                   433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       
           TOXA_PSEAE   424 EFLGDGGDISFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTGLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG 630
               SCOP domains d1zm3f_ F: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains 1zm3F00 F:399-605 Diphtheria Toxin, domain 1                                                                                                                                                                    CATH domains
           Pfam domains (1) Exotox-A_cataly-1zm3F01 F:399-605                                                                                                                                                                               Pfam domains (1)
           Pfam domains (2) Exotox-A_cataly-1zm3F02 F:399-605                                                                                                                                                                               Pfam domains (2)
           Pfam domains (3) Exotox-A_cataly-1zm3F03 F:399-605                                                                                                                                                                               Pfam domains (3)
         Sec.struct. author ...................hhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhh................eee..hhhhhhh................eeeeeeee.hhhh.eee......hhhhhhhhhhhhh........eeeee......eeeeehhhhhh..eeee..............hhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zm3 F 399 EFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG 605
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 18)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (7, 21)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (5, 15)

Asymmetric Unit
(-)
Clan: EF-G_C (20)
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: S5 (103)
(-)
Clan: no clan defined [family: Exotox-A_cataly] (4)
(-)
Clan: no clan defined [family: GTP_EFTU_D2] (39)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E   (EF2_YEAST | P32324)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:1990145    maintenance of translational fidelity    Suppression of the occurrence of translational errors, such as codon-anticodon mis-paring, during the process of translation of a protein using an mRNA template.
    GO:0017183    peptidyl-diphthamide biosynthetic process from peptidyl-histidine    The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria.
    GO:0045901    positive regulation of translational elongation    Any process that activates or increases the frequency, rate or extent of translational elongation.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain B,D,F   (TOXA_PSEAE | P11439)
molecular function
    GO:0047286    NAD+-diphthamide ADP-ribosyltransferase activity    Catalysis of the reaction: peptide diphthamide + NAD+ = peptide N-(ADP-D-ribosyl)diphthamide + niacinamide.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).

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  TOXA_PSEAE | P11439
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  2.4.2.36
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EF2_YEAST | P32324: 1n0u 1n0v 1u2r 1zm2 1zm4 1zm9 2e1r 2npf 2p8w 2p8x 2p8y 2p8z 2zit 3b78 3b82 3b8h 3dny 4v4b 5juo 5jup 5jus 5jut 5juu
        TOXA_PSEAE | P11439: 1aer 1dma 1ikp 1ikq 1xk9 1zm2 1zm4 1zm9 2zit 3b78 3b82 3b8h

(-) Related Entries Specified in the PDB File

1aer STRUCTURE CATALYTIC FRAGMENT OF ETA IN COMPLEX WITH BTAD
1n0u STRUCTURE OF EEF2
1zm2
1zm4
1zm9