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1ZM3
Biol. Unit 3
Info
Asym.Unit (491 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (167 KB)
Biol.Unit 3 (166 KB)
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(1)
Title
:
STRUCTURE OF THE APO EEF2-ETA COMPLEX
Authors
:
R. Joergensen, A. R. Merrill, S. P. Yates, V. E. Marquez, A. L. Schwan, T. Boesen, G. R. Andersen
Date
:
10 May 05 (Deposition) - 24 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.07
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Elongation Factor, Toxin, Adp-Ribosylation, Biosynthetic Protein/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Joergensen, A. R. Merrill, S. P. Yates, V. E. Marquez, A. L. Schwan, T. Boesen, G. R. Andersen
Exotoxin A-Eef2 Complex Structure Indicates Adp Ribosylation By Ribosome Mimicry.
Nature V. 436 979 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: {3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H... (DDEa)
1b: {3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H... (DDEb)
1c: {3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H... (DDEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DDE
1
Mod. Amino Acid
{3-[4-(2-AMINO-2-CARBOXY-ETHYL)-1H-IMIDAZOL-2-YL]-1-CARBAMOYL-PROPYL}-TRIMETHYL-AMMONIUM
[
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (E:67-73)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EF2_YEAST
58-73
1
-
-
E:67-73
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 18)
Info
All SCOP Domains
1a: SCOP_d1zm3a1 (A:344-481)
1b: SCOP_d1zm3c1 (C:344-481)
1c: SCOP_d1zm3e1 (E:344-481)
2a: SCOP_d1zm3b_ (B:)
2b: SCOP_d1zm3f_ (F:)
2c: SCOP_d1zm3d_ (D:)
3a: SCOP_d1zm3a4 (A:482-560)
3b: SCOP_d1zm3a5 (A:726-842)
3c: SCOP_d1zm3c4 (C:482-560)
3d: SCOP_d1zm3c5 (C:726-842)
3e: SCOP_d1zm3e4 (E:482-560)
3f: SCOP_d1zm3e5 (E:726-842)
4a: SCOP_d1zm3a3 (A:561-725)
4b: SCOP_d1zm3e3 (E:561-725)
4c: SCOP_d1zm3c3 (C:561-725)
5a: SCOP_d1zm3a2 (A:2-343)
5b: SCOP_d1zm3c2 (C:2-343)
5c: SCOP_d1zm3e2 (E:2-343)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d1zm3a1
A:344-481
1b
d1zm3c1
C:344-481
1c
d1zm3e1
E:344-481
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
automated matches
(21)
Pseudomonas aeruginosa [TaxId: 287]
(4)
2a
d1zm3b_
B:
2b
d1zm3f_
F:
2c
d1zm3d_
D:
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
EF-G C-terminal domain-like
(33)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
3a
d1zm3a4
A:482-560
3b
d1zm3a5
A:726-842
3c
d1zm3c4
C:482-560
3d
d1zm3c5
C:726-842
3e
d1zm3e4
E:482-560
3f
d1zm3e5
E:726-842
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
4a
d1zm3a3
A:561-725
4b
d1zm3e3
E:561-725
4c
d1zm3c3
C:561-725
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(9)
5a
d1zm3a2
A:2-343
5b
d1zm3c2
C:2-343
5c
d1zm3e2
E:2-343
[
close SCOP info
]
CATH Domains
(7, 21)
Info
all CATH domains
1a: CATH_1zm3A06 (A:722-842)
1b: CATH_1zm3C06 (C:722-842)
1c: CATH_1zm3E06 (E:722-842)
2a: CATH_1zm3A04 (A:482-562)
2b: CATH_1zm3C04 (C:482-562)
2c: CATH_1zm3E04 (E:482-562)
3a: CATH_1zm3A05 (A:568-721)
3b: CATH_1zm3C05 (C:568-721)
3c: CATH_1zm3E05 (E:568-721)
4a: CATH_1zm3A01 (A:2-221,A:329-344)
4b: CATH_1zm3C01 (C:2-221,C:329-344)
4c: CATH_1zm3E01 (E:2-221,E:329-344)
5a: CATH_1zm3B00 (B:399-605)
5b: CATH_1zm3D00 (D:399-605)
5c: CATH_1zm3F00 (F:399-605)
6a: CATH_1zm3A02 (A:222-328)
6b: CATH_1zm3C02 (C:222-328)
6c: CATH_1zm3E02 (E:222-328)
7a: CATH_1zm3A03 (A:345-481)
7b: CATH_1zm3C03 (C:345-481)
7c: CATH_1zm3E03 (E:345-481)
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(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.240, no name defined]
(21)
Baker's yeast (Saccharomyces cerevisiae)
(7)
1a
1zm3A06
A:722-842
1b
1zm3C06
C:722-842
1c
1zm3E06
E:722-842
Homologous Superfamily
:
Elongation Factor G (Translational Gtpase), domain 3
(20)
Baker's yeast (Saccharomyces cerevisiae)
(7)
2a
1zm3A04
A:482-562
2b
1zm3C04
C:482-562
2c
1zm3E04
E:482-562
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Baker's yeast (Saccharomyces cerevisiae)
(10)
3a
1zm3A05
A:568-721
3b
1zm3C05
C:568-721
3c
1zm3E05
E:568-721
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Baker's yeast (Saccharomyces cerevisiae)
(61)
4a
1zm3A01
A:2-221,A:329-344
4b
1zm3C01
C:2-221,C:329-344
4c
1zm3E01
E:2-221,E:329-344
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Diphtheria Toxin; domain 1
(22)
Homologous Superfamily
:
Diphtheria Toxin, domain 1
(22)
Baker's yeast (Saccharomyces cerevisiae)
(8)
5a
1zm3B00
B:399-605
5b
1zm3D00
D:399-605
5c
1zm3F00
F:399-605
Topology
:
Yeast translation eEF2 (G' domain)
(7)
Homologous Superfamily
:
Yeast translation eEF2 (G' domain)
(7)
Baker's yeast (Saccharomyces cerevisiae)
(7)
6a
1zm3A02
A:222-328
6b
1zm3C02
C:222-328
6c
1zm3E02
E:222-328
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Baker's yeast (Saccharomyces cerevisiae)
(13)
7a
1zm3A03
A:345-481
7b
1zm3C03
C:345-481
7c
1zm3E03
E:345-481
[
close CATH info
]
Pfam Domains
(5, 15)
Info
all PFAM domains
1a: PFAM_EFG_C_1zm3E01 (E:723-811)
1b: PFAM_EFG_C_1zm3E02 (E:723-811)
1c: PFAM_EFG_C_1zm3E03 (E:723-811)
2a: PFAM_GTP_EFTU_1zm3E04 (E:17-344)
2b: PFAM_GTP_EFTU_1zm3E05 (E:17-344)
2c: PFAM_GTP_EFTU_1zm3E06 (E:17-344)
3a: PFAM_EFG_IV_1zm3E07 (E:604-721)
3b: PFAM_EFG_IV_1zm3E08 (E:604-721)
3c: PFAM_EFG_IV_1zm3E09 (E:604-721)
4a: PFAM_Exotox_A_cataly_1zm3F01 (F:399-605)
4b: PFAM_Exotox_A_cataly_1zm3F02 (F:399-605)
4c: PFAM_Exotox_A_cataly_1zm3F03 (F:399-605)
5a: PFAM_GTP_EFTU_D2_1zm3E10 (E:393-470)
5b: PFAM_GTP_EFTU_D2_1zm3E11 (E:393-470)
5c: PFAM_GTP_EFTU_D2_1zm3E12 (E:393-470)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EF-G_C
(20)
Family
:
EFG_C
(14)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
1a
EFG_C-1zm3E01
E:723-811
1b
EFG_C-1zm3E02
E:723-811
1c
EFG_C-1zm3E03
E:723-811
Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
GTP_EFTU-1zm3E04
E:17-344
2b
GTP_EFTU-1zm3E05
E:17-344
2c
GTP_EFTU-1zm3E06
E:17-344
Clan
:
S5
(103)
Family
:
EFG_IV
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
3a
EFG_IV-1zm3E07
E:604-721
3b
EFG_IV-1zm3E08
E:604-721
3c
EFG_IV-1zm3E09
E:604-721
Clan
:
no clan defined [family: Exotox-A_cataly]
(4)
Family
:
Exotox-A_cataly
(4)
Pseudomonas aeruginosa
(4)
4a
Exotox-A_cataly-1zm3F01
F:399-605
4b
Exotox-A_cataly-1zm3F02
F:399-605
4c
Exotox-A_cataly-1zm3F03
F:399-605
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
5a
GTP_EFTU_D2-1zm3E10
E:393-470
5b
GTP_EFTU_D2-1zm3E11
E:393-470
5c
GTP_EFTU_D2-1zm3E12
E:393-470
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Asym.Unit (491 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
Biol.Unit 3 (166 KB)
Header - Biol.Unit 3
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