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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   PSEUDOMONAS AERUGINOSA EXOTOXIN A, WILD TYPE

Authors :   D. B. Mckay, J. E. Wedekind, C. B. Trame

Date :   04 May 01 (Deposition) - 12 Dec 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.62

Chains :   Asym./Biol. Unit : A

Keywords :   Domain I, Ii, Iii Of Exotoxin A, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. E. Wedekind, C. B. Trame, M. Dorywalska, P. Koehl, T. M. Raschke, M. Mckee, D. Fitzgerald, R. J. Collier, D. B. Mckay
Refined Crystallographic Structure Of Pseudomonas Aeruginosa Exotoxin A And Its Implications For The Molecular Mechanism Of Toxicity
J. Mol. Biol. V. 314 823 2001
PubMed-ID: 11734000 | Reference-DOI: 10.1006/JMBI.2001.5195
(for further references see the PDB file header)

Molecule 1 - EXOTOXIN A
	Chains	:	A
	EC Number	:	2.4.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMOA1A2VK352 F+ T
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PE
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	NAD-DEPENDENT ADP-RIBOSYLTRANSFERASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	NA	2	Ligand/Ion	SODIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:23 , ARG A:154 , ARG A:505	BINDING SITE FOR RESIDUE CL A 701
2	AC2	SOFTWARE	ASP A:589 , LYS A:590	BINDING SITE FOR RESIDUE CL A 702
3	AC3	SOFTWARE	ASN A:62 , LEU A:597 , HOH A:885 , HOH A:886 , HOH A:914	BINDING SITE FOR RESIDUE NA A 703
4	AC4	SOFTWARE	ASP A:54 , ASP A:69 , HOH A:906 , HOH A:949 , HOH A:1127	BINDING SITE FOR RESIDUE NA A 704

Asymmetric/Biological Unit

No.	Residues
1	A:11	-	A:15
2	A:197	-	A:214
3	A:265	-	A:287
4	A:372	-	A:379

Asymmetric/Biological Unit

No.	Residues
1	Leu A:535	-	Pro A:536

(no "SAP(SNP)/Variant" information available for 1IKQ)

(no "PROSITE Motif" information available for 1IKQ)

(no "Exon" information available for 1IKQ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:599
 aligned with TOXA_PSEAE | P11439 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:605
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626     
           TOXA_PSEAE    27 EEAFDLWNECAKACVLDLKDGVRSSRMSVDPAIADTNGQGVLHYSMVLEGGNDALKLAIDNALSITSDGLTIRLEGGVEPNKPVRYSYTRQARGSWSLNWLVPIGHEKPSNIKVFIHELNAGNQLSHMSPIYTIEMGDELLAKLARDATFFVRAHESNEMQPTLAISHAGVSVVMAQAQPRREKRWSEWASGKVLCLLDPLDGVYNYLAQQRCNLDDTWEGKIYRVLAGNPAKHDLDIKPTVISHRLHFPEGGSLAALTAHQACHLPLETFTRHRQPRGWEQLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDLGEAIREQPEQARLALTLAAAESERFVRQGTGNDEAGAASADVVSLTCPVAAGECAGPADSGDALLERNYPTGAEFLGDGGDISFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTGLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGK 631
               SCOP domains d1ikqa1 A:2-251 Exotoxin A, N-terminal domain                                                                                                                                                                                                             d1ikqa3 A:252-394 Exotoxin A, middle domain                                                                                                    d1ikqa2 A:395-606 Exotoxin A, C-terminal domain                                                                                                                                                                      SCOP domains
               CATH domains 1ikqA01 A:2-230  [code=2.60.120.200, no name defined]                                                                                                                                                                                ----------1ikqA02 A:241-398 Exotoxin A, middle domain                                                                                                                   1ikqA03 A:399-605 Diphtheria Toxin, domain 1                                                                                                                                                                   - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh..eeeee.....eeeeee.hhhhhh...eeeeeeeeee......eeeee...eeeee...eeeeee.......eeeeee......eeeeeeeeee.....eeeeeeeee.....eeee..eeeee.hhhhhhhhh.eeeeeeee........eeeeeeeeeeeee..------..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.eeeeeee..............eeee.....hhhhhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeee..........hhhhhhheeeee..hhhhh.................hhhhhhhhhhhhhhh.eeeeeeeeehhhhhhhhhhh.........hhhhh.eee..hhhhhhh................eeeeeeee.hhhh.eee........hhhhhhhhhhh........eeeee......eeeeehhhhhhh.eeee..............hhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ikq A   2 EEAFDLWNECAKACVLDLKDGVRSSRMSVDPAIADTNGQGVLHYSMVLEGGNDALKLAIDNALSITSDGLTIRLEGGVEPNKPVRYSYTRQARGSWSLNWLVPIGHEKPSNIKVFIHELNAGNQLSHMSPIYTIEMGDELLAKLARDATFFVRAHESNEMQPTLAISHAGVSVVMAQ------KRWSEWASGKVLCLLDPLDGVYNYLAQQRCNLDDTWEGKIYRVLAGNPAKHDLDIKPTVISHRLHFPEGGSLAALTAHQACHLPLETFTRHRQPRGWEQLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDLGEAIREQPEQARLALTLAAAESERFVRQGTGNDEAGAANADVVSLTCPVAAGECAGPADSGDALLERNYPTGAEFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGK 606
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      |  -   |   191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601     
                                                                                                                                                                                                          178    185

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1IKQ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (TOXA_PSEAE | P11439)


GO:0047286	NAD+-diphthamide ADP-ribosyltransferase activity	Catalysis of the reaction: peptide diphthamide + NAD+ = peptide N-(ADP-D-ribosyl)diphthamide + niacinamide.
GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).

Asymmetric/Biological Unit
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		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Leu A:535 - Pro A:536	[ RasMol ]

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	2.4.2.-
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UniProtKB/Swiss-Prot
	TOXA_PSEAE \| P11439	:	1aer 1dma 1ikp 1xk9 1zm2 1zm3 1zm4 1zm9 2zit 3b78 3b82 3b8h

1aer	DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED WITH -TAD
1dma	DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED WITH NICOTINAMIDE AND AMP
1ikp	EXOTOXIN A OF PSEUDOMONAS AERUGINOSA (DOMAIN I,II,III), MUTANT W281A

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (4, 4)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

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