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(-) Description

Title :  B-DNA
 
Authors :  F. A. Hays, A. T. Teegarden, Z. J. R. Jones, M. Harms, D. Raup, J. Watson, E. Cavaliere, P. S. Ho
Date :  19 Apr 05  (Deposition) - 10 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Crystallographic Screen, Dna Structure, Holliday Junction, Molecular Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. A. Hays, A. Teegarden, Z. J. Jones, M. Harms, D. Raup, J. Watson, E. Cavaliere, P. S. Ho
How Sequence Defines Structure: A Crystallographic Map Of Dna Structure And Conformation.
Proc. Natl. Acad. Sci. Usa V. 102 7157 2005
PubMed-ID: 15870206  |  Reference-DOI: 10.1073/PNAS.0409455102
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*GP*TP*TP*AP*AP*CP*GP*G)-3'
    Chains: A, B
    Engineered: YES
    Other Details: DNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'- TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:27 , HOH A:112 , HOH B:33 , HOH B:34 , HOH B:48 , HOH B:76 , HOH B:93BINDING SITE FOR RESIDUE CA A 21
2AC2SOFTWAREHOH B:44 , HOH B:50 , HOH B:108BINDING SITE FOR RESIDUE CA B 25
3AC3SOFTWAREDC A:8 , HOH A:65 , HOH A:109BINDING SITE FOR RESIDUE CA A 30
4AC4SOFTWAREHOH A:28 , HOH A:29 , HOH A:75 , HOH A:86 , HOH B:46 , HOH B:60BINDING SITE FOR RESIDUE CA B 49

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZF0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZF0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZF0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZF0)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZF0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1zf0 A  1 CCGTTAACGG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  1zf0 B 11 CCGTTAACGG 20
                                    20
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZF0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZF0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZF0)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZF0)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1ZF0)

(-) Related Entries Specified in the PDB File

1dcv 1dcw 1p4y 1p4z 1zew 1zex 1zey 1zez 1zf1 1zf2 1zf3 1zf4 1zf5 1zf6 1zf7 1zf8 1zf9 1zfa 1zfb 1zfc 1zfe 1zff 1zfg 1zfh 1zfm