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(-) Description

Title :  ACC HOLLIDAY JUNCTION
 
Authors :  F. A. Hays, A. T. Teegarden, Z. J. R. Jones, M. Harms, D. Raup, J. Watson, E. Cavaliere, P. S. Ho
Date :  19 Apr 05  (Deposition) - 10 May 05  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Crystallographic Screen, Dna Structure, Holliday Junction, Molecular Structure, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. A. Hays, A. Teegarden, Z. J. Jones, M. Harms, D. Raup, J. Watson, E. Cavaliere, P. S. Ho
How Sequence Defines Structure: A Crystallographic Map Of Dna Structure And Conformation.
Proc. Natl. Acad. Sci. Usa V. 102 7157 2005
PubMed-ID: 15870206  |  Reference-DOI: 10.1073/PNAS.0409455102

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'
    ChainsA, B
    EngineeredYES
    Other DetailsDNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL- PROTECTING GROUP LEFT INTACT AT THE 5'- TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN.
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:24 , HOH A:39 , HOH A:50 , HOH A:55 , HOH B:47BINDING SITE FOR RESIDUE CA A 25

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1zez A  1 CCGGTACCGG 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  1zez B 11 CCGGTACCGG 20
                                    20

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 Related Entries

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(-) Related Entries Specified in the PDB File

1dcv 1dcw 1p4y 1p4z 1zew 1zex 1zey 1zf0 1zf1 1zf2 1zf3 1zf4 1zf5 1zf6 1zf7 1zf8 1zf9 1zfa 1zfb 1zfc 1zfe 1zff 1zfg 1zfh 1zfm