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(-) Description

Title :  GGT DUPLEX A-DNA
 
Authors :  F. A. Hays, A. T. Teegarden, Z. J. R. Jones, M. Harms, D. Raup, J. Watson, E. Cavaliere, P. S. Ho
Date :  20 Apr 05  (Deposition) - 10 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Crystallographic Screen, Dna Structure, Holliday Junction, Molecular Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. A. Hays, A. Teegarden, Z. J. Jones, M. Harms, D. Raup, J. Watson, E. Cavaliere, P. S. Ho
How Sequence Defines Structure: A Crystallographic Map Of Dna Structure And Conformation.
Proc. Natl. Acad. Sci. Usa V. 102 7157 2005
PubMed-ID: 15870206  |  Reference-DOI: 10.1073/PNAS.0409455102
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*AP*CP*CP*GP*GP*TP*GP*G)-3'
    ChainsA, B
    EngineeredYES
    Other DetailsDNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'- TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN.
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH B:28 , HOH B:30 , HOH B:33 , HOH B:46 , HOH B:48 , HOH B:50 , HOH B:61BINDING SITE FOR RESIDUE CA B 21

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZF8)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1ZF8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  1zf8 A  1 CCACCGGTGG 10
                                    10

Chain B from PDB  Type:DNA  Length:10
                                         
                  1zf8 B 11 CCACCGGTGG 20
                                    20

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZF8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZF8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZF8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1dcv 1dcw 1p4y 1p4z 1zew 1zex 1zey 1zez 1zf0 1zf1 1zf2 1zf3 1zf4 1zf5 1zf6 1zf7 1zf9 1zfa 1zfb 1zfc 1zfe 1zff 1zfg 1zfh 1zfm