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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL LENGTH ARNA
 
Authors :  P. Z. Gatzeva-Topalova, A. P. May, M. C. Sousa
Date :  24 Mar 05  (Deposition) - 07 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Rossmann Fold; Ob-Like Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Z. Gatzeva-Topalova, A. P. May, M. C. Sousa
Structure And Mechanism Of Arna: Conformational Change Implies Ordered Dehydrogenase Mechanism In Key Enzyme For Polymyxin Resistance
Structure V. 13 929 2005
PubMed-ID: 15939024  |  Reference-DOI: 10.1016/J.STR.2005.03.018
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN ARNA
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMS122
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PMRI, YFBG
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: FULL LENGTH
    Other Details - Source: PLASMID IS AN ENGINEERED VARIANT OF THE PET28
    Synonym: HYPOTHETICAL PROTEIN YFBG

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1ATP6Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2UGA6Ligand/IonURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:324 , GLY A:325 , PHE A:326 , ILE A:327 , ASP A:347 , ILE A:348 , GLY A:367 , ASP A:368 , ILE A:369 , LEU A:389 , VAL A:390 , ALA A:393 , ARG A:510BINDING SITE FOR RESIDUE ATP A 1001
02AC2SOFTWAREASN B:324 , GLY B:325 , PHE B:326 , ILE B:327 , ASP B:347 , ILE B:348 , GLY B:367 , ASP B:368 , ILE B:369 , LEU B:389 , VAL B:390 , ALA B:393 , ARG B:510BINDING SITE FOR RESIDUE ATP B 1002
03AC3SOFTWAREGLY C:322 , GLY C:325 , PHE C:326 , ILE C:327 , ASP C:347 , ILE C:348 , GLY C:367 , ASP C:368 , ILE C:369 , LEU C:389 , VAL C:390 , ARG C:510BINDING SITE FOR RESIDUE ATP C 1003
04AC4SOFTWAREGLY D:325 , PHE D:326 , ILE D:327 , ASP D:347 , ILE D:348 , GLY D:367 , ASP D:368 , ILE D:369 , LEU D:389 , VAL D:390 , ARG D:510BINDING SITE FOR RESIDUE ATP D 1004
05AC5SOFTWAREGLY E:325 , PHE E:326 , ILE E:327 , ASP E:347 , ILE E:348 , GLY E:367 , ASP E:368 , ILE E:369 , LEU E:389 , VAL E:390 , ARG E:510BINDING SITE FOR RESIDUE ATP E 1005
06AC6SOFTWAREASN F:324 , GLY F:325 , PHE F:326 , ILE F:327 , ASP F:347 , ILE F:348 , GLY F:367 , ASP F:368 , ILE F:369 , LEU F:389 , VAL F:390 , ALA F:393 , ARG F:510BINDING SITE FOR RESIDUE ATP F 1006
07AC7SOFTWAREALA A:393 , PRO A:395 , TYR A:398 , THR A:432 , SER A:433 , GLU A:434 , ARG A:460 , TYR A:463 , PRO A:490 , PHE A:491 , ASN A:492 , ARG A:510 , ALA A:511 , GLN A:514 , LYS A:526 , LEU A:527 , ILE A:528 , GLN A:533 , ARG A:535 , ILE A:574 , TYR A:609 , TYR A:613 , ASP A:615 , ARG A:619BINDING SITE FOR RESIDUE UGA A 1101
08AC8SOFTWAREALA B:393 , PRO B:395 , TYR B:398 , THR B:432 , SER B:433 , GLU B:434 , ARG B:460 , TYR B:463 , PRO B:490 , PHE B:491 , ASN B:492 , ARG B:510 , ALA B:511 , GLN B:514 , LYS B:526 , LEU B:527 , ILE B:528 , GLN B:533 , ARG B:535 , ILE B:574 , TYR B:609 , TYR B:613 , ASP B:615 , ARG B:619BINDING SITE FOR RESIDUE UGA B 1102
09AC9SOFTWAREALA C:393 , PRO C:395 , TYR C:398 , THR C:432 , SER C:433 , GLU C:434 , ARG C:460 , TYR C:463 , PRO C:490 , PHE C:491 , ASN C:492 , ARG C:510 , ALA C:511 , GLN C:514 , LYS C:526 , LEU C:527 , ILE C:528 , GLN C:533 , ARG C:535 , ILE C:574 , TYR C:609 , TYR C:613 , ASP C:615 , ARG C:619BINDING SITE FOR RESIDUE UGA C 1103
10BC1SOFTWAREALA D:393 , PRO D:395 , TYR D:398 , THR D:432 , SER D:433 , GLU D:434 , ARG D:460 , TYR D:463 , PRO D:490 , PHE D:491 , ASN D:492 , ARG D:510 , ALA D:511 , GLN D:514 , LYS D:526 , LEU D:527 , ILE D:528 , GLN D:533 , ARG D:535 , ILE D:574 , TYR D:609 , TYR D:613 , ASP D:615 , ARG D:619BINDING SITE FOR RESIDUE UGA D 1104
11BC2SOFTWAREALA E:393 , PRO E:395 , TYR E:398 , THR E:432 , SER E:433 , GLU E:434 , ARG E:460 , TYR E:463 , PRO E:490 , PHE E:491 , ASN E:492 , ARG E:510 , ALA E:511 , GLN E:514 , LYS E:526 , LEU E:527 , ILE E:528 , GLN E:533 , ARG E:535 , ILE E:574 , TYR E:609 , TYR E:613 , ASP E:615 , ARG E:619BINDING SITE FOR RESIDUE UGA E 1105
12BC3SOFTWAREALA F:393 , PRO F:395 , TYR F:398 , THR F:432 , SER F:433 , GLU F:434 , ARG F:460 , TYR F:463 , PRO F:490 , PHE F:491 , ASN F:492 , ARG F:510 , ALA F:511 , GLN F:514 , LYS F:526 , LEU F:527 , ILE F:528 , GLN F:533 , ARG F:535 , ILE F:574 , TYR F:609 , TYR F:613 , ASP F:615 , ARG F:619BINDING SITE FOR RESIDUE UGA F 1106

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z7E)

(-) Cis Peptide Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1Leu A:108 -Pro A:109
2Asp A:226 -Pro A:227
3Ala A:263 -Pro A:264
4Leu B:108 -Pro B:109
5Asp B:226 -Pro B:227
6Ala B:263 -Pro B:264
7Leu C:108 -Pro C:109
8Asp C:226 -Pro C:227
9Ala C:263 -Pro C:264
10Leu D:108 -Pro D:109
11Asp D:226 -Pro D:227
12Ala D:263 -Pro D:264
13Leu E:108 -Pro E:109
14Asp E:226 -Pro E:227
15Ala E:263 -Pro E:264
16Leu F:108 -Pro F:109
17Asp F:226 -Pro F:227
18Ala F:263 -Pro F:264

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z7E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z7E)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z7E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:639
 aligned with ARNA_ECOLI | P77398 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:656
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
           ARNA_ECOLI     1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
               SCOP domains d1z7ea3 A:1-200 Polymyxin resistan        ce protein ArnA, N-terminal domain                                                                                                                            d1z7ea1 A:201-304 Polymyxin resistance protein ArnA, domain 2                                                    d1z7ea2 A:314-656 Polymyxin resistance protein ArnA (PrmI)                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee....--------.hhhhhhhhhh..ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh......hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeee..ee..........eee...eeee....eeee.eeee.....eehhhhhhh.........---------..eeeeee...hhhhhhhhhhhhhh..eeeeeee.....hhhhh....eeeee.....hhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhh....hhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh...eeeee.hhh.eeehhhhhhhhhhhhhhh.hhhhh.....eeee.hhhhhh............hhhhhhhhh.....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z7e A   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD--------GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRL---------RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30   |     -  |     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   |     -   |   320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
                                                            34       43                                                                                                                                                                                                                                                                  304       314                                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:639
 aligned with ARNA_ECOLI | P77398 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:656
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
           ARNA_ECOLI     1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
               SCOP domains d1z7eb3 B:1-200 Polymyxin resistan        ce protein ArnA, N-terminal domain                                                                                                                            d1z7eb1 B:201-304 Polymyxin resistance protein ArnA, domain 2                                                    d1z7eb2 B:314-656 Polymyxin resistance protein ArnA (PrmI)                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee....--------.hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh......hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeee..ee..........eee...eeee....eeee.eeee.....eehhhhhhhh........---------..eeeeee...hhhhhhhhhhhhhh..eeeeeee.....hhhhh....eeeee.....hhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhh....hhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh...eeeee.hhh.eeehhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh............hhhhhhhhh.....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z7e B   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD--------GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRL---------RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30   |     -  |     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   |     -   |   320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
                                                            34       43                                                                                                                                                                                                                                                                  304       314                                                                                                                                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:639
 aligned with ARNA_ECOLI | P77398 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:656
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
           ARNA_ECOLI     1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
               SCOP domains d1z7ec3 C:1-200 Polymyxin resistan        ce protein ArnA, N-terminal domain                                                                                                                            d1z7ec1 C:201-304 Polymyxin resistance protein ArnA, domain 2                                                    d1z7ec2 C:314-656 Polymyxin resistance protein ArnA (PrmI)                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee....--------.hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeee..ee..........eee...eeee....eeee.eeee.....eehhhhhhh.........---------..eeeeee...hhhhhhhhhhhhhh..eeeeeee.....hhhhh....eeeee.....hhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhh....hhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh...eeeee.hhh.eeehhhhhhhhhhhhhhh.hhhhh.....eeee.hhhhhh............hhhhhhhhh.....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z7e C   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD--------GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRL---------RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30   |     -  |     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   |     -   |   320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
                                                            34       43                                                                                                                                                                                                                                                                  304       314                                                                                                                                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:644
 aligned with ARNA_ECOLI | P77398 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:656
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
           ARNA_ECOLI     1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
               SCOP domains d1z7ed3 D:1-200 Polymyxin resistan        ce protein ArnA, N-terminal domain                                                                                                                            d1z7ed1 D:201-304 Polymyxin resistance protein ArnA, domain 2                                           d1z7    ed2 D:305-656 Polymyxin resistance protein ArnA (PrmI)                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee....--------.hhhhhhhhhh..ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeee..ee..........eee...eeee....eeee.eeee.....eehhhhhhhhh...........----...eeeeee...hhhhhhhhhhhhhh..eeeeeee.....hhhhh....eeeee.....hhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhh....hhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh...eeeee.hhh.eeehhhhhhhhhhhhhhh.hhhhh.....eeee.hhhhhh............hhhhhhhhh.....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z7e D   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD--------GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQP----RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30   |     -  |     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       | -  |    320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
                                                            34       43                                                                                                                                                                                                                                                                      308  313                                                                                                                                                                                                                                                                                                                                                       


Chain E from PDB  Type:PROTEIN  Length:639
 aligned with ARNA_ECOLI | P77398 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:656
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
           ARNA_ECOLI     1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
               SCOP domains d1z7ee3 E:1-200 Polymyxin resistan        ce protein ArnA, N-terminal domain                                                                                                                            d1z7ee1 E:201-304 Polymyxin resistance protein ArnA, domain 2                                                    d1z7ee2 E:314-656 Polymyxin resistance protein ArnA (PrmI)                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee....--------.hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh....eeeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeee..ee..........eee...eeee....eeee.eeee.....eehhhhhhhhh.......---------..eeeeee...hhhhhhhhhhhhhh..eeeeeee.....hhhhh....eeeee.....hhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhh....hhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh...eeeee.hhh.eeehhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh............hhhhhhhhh.....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z7e E   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD--------GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRL---------RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30   |     -  |     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   |     -   |   320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
                                                            34       43                                                                                                                                                                                                                                                                  304       314                                                                                                                                                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:639
 aligned with ARNA_ECOLI | P77398 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:656
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
           ARNA_ECOLI     1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
               SCOP domains d1z7ef3 F:1-200 Polymyxin resistan        ce protein ArnA, N-terminal domain                                                                                                                            d1z7ef1 F:201-304 Polymyxin resistance protein ArnA, domain 2                                                    d1z7ef2 F:314-656 Polymyxin resistance protein ArnA (PrmI)                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------Formyl_trans_N-1z7        eF13 F:17-177                                                                                                                          ----------------------Formyl_trans_C-1z7eF07 F:200-297                                                                  -------         ----Epimerase-1z7eF01 F:318-566                                                                                                                                                                                                                              ------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ----------------Formyl_trans_N-1z7        eF14 F:17-177                                                                                                                          ----------------------Formyl_trans_C-1z7eF08 F:200-297                                                                  -------         ----Epimerase-1z7eF02 F:318-566                                                                                                                                                                                                                              ------------------------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ----------------Formyl_trans_N-1z7        eF15 F:17-177                                                                                                                          ----------------------Formyl_trans_C-1z7eF09 F:200-297                                                                  -------         ----Epimerase-1z7eF03 F:318-566                                                                                                                                                                                                                              ------------------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------Formyl_trans_N-1z7        eF16 F:17-177                                                                                                                          ----------------------Formyl_trans_C-1z7eF10 F:200-297                                                                  -------         ----Epimerase-1z7eF04 F:318-566                                                                                                                                                                                                                              ------------------------------------------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) ----------------Formyl_trans_N-1z7        eF17 F:17-177                                                                                                                          ----------------------Formyl_trans_C-1z7eF11 F:200-297                                                                  -------         ----Epimerase-1z7eF05 F:318-566                                                                                                                                                                                                                              ------------------------------------------------------------------------------------------ Pfam domains (5)
           Pfam domains (6) ----------------Formyl_trans_N-1z7        eF18 F:17-177                                                                                                                          ----------------------Formyl_trans_C-1z7eF12 F:200-297                                                                  -------         ----Epimerase-1z7eF06 F:318-566                                                                                                                                                                                                                              ------------------------------------------------------------------------------------------ Pfam domains (6)
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee....--------.hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeee..ee..........eee...eeee....eeee.eeee.....eehhhhhhhh........---------..eeeeee...hhhhhhhhhhhhhh..eeeeeee.....hhhhh....eeeee.....hhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.....hhhhhh....hhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh...eeeee.hhh.eeehhhhhhhhhhhhhhh.hhhhh.....eeee.hhhhhh............hhhhhhhhh.....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z7e F   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD--------GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRL---------RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30   |     -  |     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300   |     -   |   320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650      
                                                            34       43                                                                                                                                                                                                                                                                  304       314
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 18)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z7E)

(-) Pfam Domains  (3, 18)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: Formyl_trans_C] (5)
(-)
Clan: no clan defined [family: Formyl_trans_N] (25)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ARNA_ECOLI | P77398)
molecular function
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0099619    UDP-4-amino-4-deoxy-L-arabinose formyltransferase activity    Catalysis of the reaction: 10-formyltetrahydrofolate + UDP-4-amino-4-deoxy-beta-L-arabinopyranose = 5,6,7,8-tetrahydrofolate + UDP-4-deoxy-4-formamido-beta-L-arabinopyranose
    GO:0048040    UDP-glucuronate decarboxylase activity    Catalysis of the reaction: H(+) + UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose.
    GO:0099618    UDP-glucuronic acid dehydrogenase activity    Catalytis of the reaction: UDP-glucuronate + NAD+ = UDP-beta-L-threo-pentapyranos-4-ulose + CO2 + NADH + H+
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050662    coenzyme binding    Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
    GO:0016742    hydroxymethyl-, formyl- and related transferase activity    Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0033320    UDP-D-xylose biosynthetic process    The chemical reactions and pathways resulting in the formation of UDP-D-xylose, uridinediphosphoxylose, a substance composed of xylose in glycosidic linkage with uridine diphosphate.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0009245    lipid A biosynthetic process    The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
    GO:0046493    lipid A metabolic process    The chemical reactions and pathways involving lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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  1z7e
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARNA_ECOLI | P77398: 1u9j 1yrw 1z73 1z74 1z75 1z7b 2bll 2bln 4wkg

(-) Related Entries Specified in the PDB File

1z73 1z74 1z75 1z7b