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(-) Description

Title :  THE CRYSTAL STRUCTURE OF APO ARNA FEATURES AN UNEXPECTED CENTRAL BINDING POCKET AND PROVIDES AN EXPLANATION FOR ENZYMATIC COOP-ERATIVITY
 
Authors :  C. Grimm
Date :  02 Oct 14  (Deposition) - 17 Dec 14  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Arna, Multi-Drug Resistance, Mdr, Polymyxin, Dehydrogenase, Transformylase, Cooperativity, Allosteric Regulation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Fischer, S. Hertlein, C. Grimm
The Structure Of Apo Arna Features An Unexpected Central Binding Pocket And Provides An Explanation For Enzymatic Cooperativity.
Acta Crystallogr. , Sect. D V. 71 687 2015
PubMed-ID: 25760615  |  Reference-DOI: 10.1107/S1399004714026686

(-) Compounds

Molecule 1 - BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
    Chains: A, B, C, D, E, F
    EC Number: 2.1.2.13, 1.1.1.305
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: POLYMYXIN RESISTANCE PROTEIN PMRI

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2DTT2Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:372 , TRP A:375 , HIS B:372 , TRP B:375 , TRP C:375binding site for residue DTT A 701
2AC2SOFTWARETYR A:83 , LEU A:117 , HIS A:162binding site for residue ACT A 702
3AC3SOFTWARETRP D:375 , TRP E:375 , TRP F:375binding site for residue DTT D 701
4AC4SOFTWARETYR F:83 , LEU F:117 , HIS F:162binding site for residue ACT F 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WKG)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric/Biological Unit
No.Residues
1Leu A:108 -Pro A:109
2Asp A:226 -Pro A:227
3Ala A:263 -Pro A:264
4Leu B:108 -Pro B:109
5Asp B:226 -Pro B:227
6Ala B:263 -Pro B:264
7Leu C:108 -Pro C:109
8Asp C:226 -Pro C:227
9Ala C:263 -Pro C:264
10Leu D:108 -Pro D:109
11Asp D:226 -Pro D:227
12Ala D:263 -Pro D:264
13Leu E:108 -Pro E:109
14Asp E:226 -Pro E:227
15Ala E:263 -Pro E:264
16Gln E:300 -Gly E:301
17Leu F:108 -Pro F:109
18Asp F:226 -Pro F:227
19Ala F:263 -Pro F:264

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WKG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WKG)

(-) Exons   (0, 0)

(no "Exon" information available for 4WKG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:636
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh......hhhhhh.....hhhhhhhhhhhhh.....eeeee..eeeeeeeeeee..........eee...eeee....eeeeeeeee.....eehhhhhhhhh.........eeeeee...hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee......hhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh..............eee....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..ee..............hhhhhhhhhhhhhh..eeee.....ee..eehhhhhhhhhhhhhhhhhh....eeee.hhhhheehhhhhhhhhhhhhh..hhhhh.....eeee............hhhhhhhhh.....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wkg A   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30     || 44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304|      323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603   ||  620       630       640       650      
                                                              36|                                                                                                                                                                                                                                                                    304|                                                                                                                                                                                                                                                                                                  607|                                         
                                                               41                                                                                                                                                                                                                                                                     314                                                                                                                                                                                                                                                                                                   615                                         


Chain B from PDB  Type:PROTEIN  Length:643
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh......hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeeeeeee..........eee...eeee....eeeeeeeee.....eehhhhhhhhh.........eeeeee...hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee......hhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhh...eeeeee..ee..............hhhhhhhhhhhhhh..eeee.....ee..eehhhhhhhhhhhhhhhhhh....eeee.hhhhheehhhhhhhhhhhhhh..hhhhh.....eeee...................hhhhhhhhh.....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkg B   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30     || 44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304|      323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653   
                                                              36|                                                                                                                                                                                                                                                                    304|                                                                                                                                                                                                                                                                                                                                                      
                                                               41                                                                                                                                                                                                                                                                     314                                                                                                                                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee........hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh......hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeeeeeee..........eee...eeee....eeeeeeeee.....eehhhhhhhhh.........eeeeee...hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee......hhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh..............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee..............hhhhhhhhhhhhhh..eeee.....ee..eehhhhhhhhhhhhhhhhhh...eeeee.hhhhheehhhhhhhhhhhhhh..hhhhh.....eeeehhhhh.........hhhhhhhhh.....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkg C   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30     || 45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604   ||  619       629       639       649       
                                                              36|                                                                                                                                                                                                                                                                   304|                                                                                                                                                                                                                                                                                                   608|                                          
                                                               42                                                                                                                                                                                                                                                                    314                                                                                                                                                                                                                                                                                                    614                                          


Chain D from PDB  Type:PROTEIN  Length:641
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee.......ee.hhhhhhhhh...eeeeeee........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.ee...hhhhhh.....hhhhhhhhhhhhh.....eeeee..eeeeeeeeeee..........eee...eeee....eeeeeeeee.....eehhhhhhhhh..........eeeeee...hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee......hhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh..............eee......hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee..............hhhhhhhhhhhhhh..eeee.....eee.eehhhhhhhhhhhhhhhhhh....eeee.hhh.eeehhhhhhhhhhhhhh..hhhhh.....eeeehhhhhh.............hhhhhhhhh.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkg D   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLRRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 655
                                    10        20        30     || 44        54        64        74        84        94       104       114       124       134 ||    146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654 
                                                              36|                                                                                            136|                                                                                                                                                                  304|                                                                                                                                                                                                                                                                                                                                                      
                                                               41                                                                                             139                                                                                                                                                                   313                                                                                                                                                                                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:643
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh......hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeeeeeee..........eee...eeee....eeeeeeeee.....eehhhhhhhhh.........eeeeee...hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee......hhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee......hhhhhhhhhhhhhhhhhhhhhh...eeeeee..ee..............hhhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh....eeee.....eeehhhhhhhhhhhhhh..hhhhh.....eeeehhhhhh.............hhhhhhhhh.....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkg E   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30     || 44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304|      323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653   
                                                              36|                                                                                                                                                                                                                                                                    304|                                                                                                                                                                                                                                                                                                                                                      
                                                               41                                                                                                                                                                                                                                                                     314                                                                                                                                                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:637
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee.......ee.hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.ee...hhhhhh.....hhhhhhhhhhhh......eeeee..eeeeeeeeeee..........eee...eeee....eeeeeeeee.....eehhhhhhhhh.........eeeeee...hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee......hhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.............eee....hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee..............hhhhhhhhhhhhhh..eeee.hhh.eee.eehhhhhhhhhhhhhhhhhh....eeee.....eeehhhhhhhhhhhhhh..hhhhh.....eeee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkg F   1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQTLGLVQGSRLRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 656
                                    10        20        30     || 44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304|      323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603   ||  619       629       639       649       
                                                              36|                                                                                                                                                                                                                                                                    304|                                                                                                                                                                                                                                                                                                  607|                                          
                                                               41                                                                                                                                                                                                                                                                     314                                                                                                                                                                                                                                                                                                   614
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WKG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WKG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WKG)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:263 - Pro A:264   [ RasMol ]  
    Ala B:263 - Pro B:264   [ RasMol ]  
    Ala C:263 - Pro C:264   [ RasMol ]  
    Ala D:263 - Pro D:264   [ RasMol ]  
    Ala E:263 - Pro E:264   [ RasMol ]  
    Ala F:263 - Pro F:264   [ RasMol ]  
    Asp A:226 - Pro A:227   [ RasMol ]  
    Asp B:226 - Pro B:227   [ RasMol ]  
    Asp C:226 - Pro C:227   [ RasMol ]  
    Asp D:226 - Pro D:227   [ RasMol ]  
    Asp E:226 - Pro E:227   [ RasMol ]  
    Asp F:226 - Pro F:227   [ RasMol ]  
    Gln E:300 - Gly E:301   [ RasMol ]  
    Leu A:108 - Pro A:109   [ RasMol ]  
    Leu B:108 - Pro B:109   [ RasMol ]  
    Leu C:108 - Pro C:109   [ RasMol ]  
    Leu D:108 - Pro D:109   [ RasMol ]  
    Leu E:108 - Pro E:109   [ RasMol ]  
    Leu F:108 - Pro F:109   [ RasMol ]  
 

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  4wkg
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    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ARNA_ECOLI | P77398
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.305
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
  2.1.2.13
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  ARNA_ECOLI | P77398
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARNA_ECOLI | P77398: 1u9j 1yrw 1z73 1z74 1z75 1z7b 1z7e 2bll 2bln

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WKG)