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1Z7E
Asym. Unit
Info
Asym.Unit (623 KB)
Biol.Unit 1 (612 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FULL LENGTH ARNA
Authors
:
P. Z. Gatzeva-Topalova, A. P. May, M. C. Sousa
Date
:
24 Mar 05 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Rossmann Fold; Ob-Like Fold, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Z. Gatzeva-Topalova, A. P. May, M. C. Sousa
Structure And Mechanism Of Arna: Conformational Change Implies Ordered Dehydrogenase Mechanism In Key Enzyme For Polymyxin Resistance
Structure V. 13 929 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
2a: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAa)
2b: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAb)
2c: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAc)
2d: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAd)
2e: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAe)
2f: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
6
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
UGA
6
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:324 , GLY A:325 , PHE A:326 , ILE A:327 , ASP A:347 , ILE A:348 , GLY A:367 , ASP A:368 , ILE A:369 , LEU A:389 , VAL A:390 , ALA A:393 , ARG A:510
BINDING SITE FOR RESIDUE ATP A 1001
02
AC2
SOFTWARE
ASN B:324 , GLY B:325 , PHE B:326 , ILE B:327 , ASP B:347 , ILE B:348 , GLY B:367 , ASP B:368 , ILE B:369 , LEU B:389 , VAL B:390 , ALA B:393 , ARG B:510
BINDING SITE FOR RESIDUE ATP B 1002
03
AC3
SOFTWARE
GLY C:322 , GLY C:325 , PHE C:326 , ILE C:327 , ASP C:347 , ILE C:348 , GLY C:367 , ASP C:368 , ILE C:369 , LEU C:389 , VAL C:390 , ARG C:510
BINDING SITE FOR RESIDUE ATP C 1003
04
AC4
SOFTWARE
GLY D:325 , PHE D:326 , ILE D:327 , ASP D:347 , ILE D:348 , GLY D:367 , ASP D:368 , ILE D:369 , LEU D:389 , VAL D:390 , ARG D:510
BINDING SITE FOR RESIDUE ATP D 1004
05
AC5
SOFTWARE
GLY E:325 , PHE E:326 , ILE E:327 , ASP E:347 , ILE E:348 , GLY E:367 , ASP E:368 , ILE E:369 , LEU E:389 , VAL E:390 , ARG E:510
BINDING SITE FOR RESIDUE ATP E 1005
06
AC6
SOFTWARE
ASN F:324 , GLY F:325 , PHE F:326 , ILE F:327 , ASP F:347 , ILE F:348 , GLY F:367 , ASP F:368 , ILE F:369 , LEU F:389 , VAL F:390 , ALA F:393 , ARG F:510
BINDING SITE FOR RESIDUE ATP F 1006
07
AC7
SOFTWARE
ALA A:393 , PRO A:395 , TYR A:398 , THR A:432 , SER A:433 , GLU A:434 , ARG A:460 , TYR A:463 , PRO A:490 , PHE A:491 , ASN A:492 , ARG A:510 , ALA A:511 , GLN A:514 , LYS A:526 , LEU A:527 , ILE A:528 , GLN A:533 , ARG A:535 , ILE A:574 , TYR A:609 , TYR A:613 , ASP A:615 , ARG A:619
BINDING SITE FOR RESIDUE UGA A 1101
08
AC8
SOFTWARE
ALA B:393 , PRO B:395 , TYR B:398 , THR B:432 , SER B:433 , GLU B:434 , ARG B:460 , TYR B:463 , PRO B:490 , PHE B:491 , ASN B:492 , ARG B:510 , ALA B:511 , GLN B:514 , LYS B:526 , LEU B:527 , ILE B:528 , GLN B:533 , ARG B:535 , ILE B:574 , TYR B:609 , TYR B:613 , ASP B:615 , ARG B:619
BINDING SITE FOR RESIDUE UGA B 1102
09
AC9
SOFTWARE
ALA C:393 , PRO C:395 , TYR C:398 , THR C:432 , SER C:433 , GLU C:434 , ARG C:460 , TYR C:463 , PRO C:490 , PHE C:491 , ASN C:492 , ARG C:510 , ALA C:511 , GLN C:514 , LYS C:526 , LEU C:527 , ILE C:528 , GLN C:533 , ARG C:535 , ILE C:574 , TYR C:609 , TYR C:613 , ASP C:615 , ARG C:619
BINDING SITE FOR RESIDUE UGA C 1103
10
BC1
SOFTWARE
ALA D:393 , PRO D:395 , TYR D:398 , THR D:432 , SER D:433 , GLU D:434 , ARG D:460 , TYR D:463 , PRO D:490 , PHE D:491 , ASN D:492 , ARG D:510 , ALA D:511 , GLN D:514 , LYS D:526 , LEU D:527 , ILE D:528 , GLN D:533 , ARG D:535 , ILE D:574 , TYR D:609 , TYR D:613 , ASP D:615 , ARG D:619
BINDING SITE FOR RESIDUE UGA D 1104
11
BC2
SOFTWARE
ALA E:393 , PRO E:395 , TYR E:398 , THR E:432 , SER E:433 , GLU E:434 , ARG E:460 , TYR E:463 , PRO E:490 , PHE E:491 , ASN E:492 , ARG E:510 , ALA E:511 , GLN E:514 , LYS E:526 , LEU E:527 , ILE E:528 , GLN E:533 , ARG E:535 , ILE E:574 , TYR E:609 , TYR E:613 , ASP E:615 , ARG E:619
BINDING SITE FOR RESIDUE UGA E 1105
12
BC3
SOFTWARE
ALA F:393 , PRO F:395 , TYR F:398 , THR F:432 , SER F:433 , GLU F:434 , ARG F:460 , TYR F:463 , PRO F:490 , PHE F:491 , ASN F:492 , ARG F:510 , ALA F:511 , GLN F:514 , LYS F:526 , LEU F:527 , ILE F:528 , GLN F:533 , ARG F:535 , ILE F:574 , TYR F:609 , TYR F:613 , ASP F:615 , ARG F:619
BINDING SITE FOR RESIDUE UGA F 1106
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 18)
Info
All SCOP Domains
1a: SCOP_d1z7ea1 (A:201-304)
1b: SCOP_d1z7eb1 (B:201-304)
1c: SCOP_d1z7ec1 (C:201-304)
1d: SCOP_d1z7ed1 (D:201-304)
1e: SCOP_d1z7ee1 (E:201-304)
1f: SCOP_d1z7ef1 (F:201-304)
2a: SCOP_d1z7ea3 (A:1-200)
2b: SCOP_d1z7eb3 (B:1-200)
2c: SCOP_d1z7ec3 (C:1-200)
2d: SCOP_d1z7ed3 (D:1-200)
2e: SCOP_d1z7ee3 (E:1-200)
2f: SCOP_d1z7ef3 (F:1-200)
3a: SCOP_d1z7ea2 (A:314-656)
3b: SCOP_d1z7ee2 (E:314-656)
3c: SCOP_d1z7ef2 (F:314-656)
3d: SCOP_d1z7eb2 (B:314-656)
3e: SCOP_d1z7ec2 (C:314-656)
3f: SCOP_d1z7ed2 (D:305-656)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
FMT C-terminal domain-like
(19)
Superfamily
:
FMT C-terminal domain-like
(19)
Family
:
Post formyltransferase domain
(9)
Protein domain
:
Polymyxin resistance protein ArnA, domain 2
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1z7ea1
A:201-304
1b
d1z7eb1
B:201-304
1c
d1z7ec1
C:201-304
1d
d1z7ed1
D:201-304
1e
d1z7ee1
E:201-304
1f
d1z7ef1
F:201-304
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Formyltransferase
(42)
Superfamily
:
Formyltransferase
(42)
Family
:
Formyltransferase
(34)
Protein domain
:
Polymyxin resistance protein ArnA, N-terminal domain
(3)
Escherichia coli [TaxId: 562]
(3)
2a
d1z7ea3
A:1-200
2b
d1z7eb3
B:1-200
2c
d1z7ec3
C:1-200
2d
d1z7ed3
D:1-200
2e
d1z7ee3
E:1-200
2f
d1z7ef3
F:1-200
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Polymyxin resistance protein ArnA (PrmI)
(7)
Escherichia coli [TaxId: 562]
(7)
3a
d1z7ea2
A:314-656
3b
d1z7ee2
E:314-656
3c
d1z7ef2
F:314-656
3d
d1z7eb2
B:314-656
3e
d1z7ec2
C:314-656
3f
d1z7ed2
D:305-656
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 18)
Info
all PFAM domains
1a: PFAM_Epimerase_1z7eF01 (F:318-566)
1b: PFAM_Epimerase_1z7eF02 (F:318-566)
1c: PFAM_Epimerase_1z7eF03 (F:318-566)
1d: PFAM_Epimerase_1z7eF04 (F:318-566)
1e: PFAM_Epimerase_1z7eF05 (F:318-566)
1f: PFAM_Epimerase_1z7eF06 (F:318-566)
2a: PFAM_Formyl_trans_C_1z7eF07 (F:200-297)
2b: PFAM_Formyl_trans_C_1z7eF08 (F:200-297)
2c: PFAM_Formyl_trans_C_1z7eF09 (F:200-297)
2d: PFAM_Formyl_trans_C_1z7eF10 (F:200-297)
2e: PFAM_Formyl_trans_C_1z7eF11 (F:200-297)
2f: PFAM_Formyl_trans_C_1z7eF12 (F:200-297)
3a: PFAM_Formyl_trans_N_1z7eF13 (F:17-177)
3b: PFAM_Formyl_trans_N_1z7eF14 (F:17-177)
3c: PFAM_Formyl_trans_N_1z7eF15 (F:17-177)
3d: PFAM_Formyl_trans_N_1z7eF16 (F:17-177)
3e: PFAM_Formyl_trans_N_1z7eF17 (F:17-177)
3f: PFAM_Formyl_trans_N_1z7eF18 (F:17-177)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Epimerase
(42)
Escherichia coli (strain K12)
(19)
1a
Epimerase-1z7eF01
F:318-566
1b
Epimerase-1z7eF02
F:318-566
1c
Epimerase-1z7eF03
F:318-566
1d
Epimerase-1z7eF04
F:318-566
1e
Epimerase-1z7eF05
F:318-566
1f
Epimerase-1z7eF06
F:318-566
Clan
:
no clan defined [family: Formyl_trans_C]
(5)
Family
:
Formyl_trans_C
(5)
Escherichia coli (strain K12)
(2)
2a
Formyl_trans_C-1z7eF07
F:200-297
2b
Formyl_trans_C-1z7eF08
F:200-297
2c
Formyl_trans_C-1z7eF09
F:200-297
2d
Formyl_trans_C-1z7eF10
F:200-297
2e
Formyl_trans_C-1z7eF11
F:200-297
2f
Formyl_trans_C-1z7eF12
F:200-297
Clan
:
no clan defined [family: Formyl_trans_N]
(25)
Family
:
Formyl_trans_N
(25)
Escherichia coli (strain K12)
(3)
3a
Formyl_trans_N-1z7eF13
F:17-177
3b
Formyl_trans_N-1z7eF14
F:17-177
3c
Formyl_trans_N-1z7eF15
F:17-177
3d
Formyl_trans_N-1z7eF16
F:17-177
3e
Formyl_trans_N-1z7eF17
F:17-177
3f
Formyl_trans_N-1z7eF18
F:17-177
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]
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