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(-) Description

Title :  CRYSTAL STRUCTURE OF TRP REPRESSOR BINDING PROTEIN WRBA IN COMPLEX WITH FMN
 
Authors :  J. Gorman, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  03 Feb 05  (Deposition) - 15 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.11
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Alpha-Beta Twisted Open Sheet, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Gorman, L. Shapiro
Crystal Structures Of The Tryptophan Repressor Binding Protein Wrba And Complexes With Flavin Mononucleotide.
Protein Sci. V. 14 3004 2005
PubMed-ID: 16322580  |  Reference-DOI: 10.1110/PS.051680805
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRP REPRESSOR BINDING PROTEIN WRBA
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneDRA0214
    Organism ScientificDEINOCOCCUS RADIODURANS
    Organism Taxid1299

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 56)

Asymmetric Unit (2, 56)
No.NameCountTypeFull Name
1FMN8Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 28)
No.NameCountTypeFull Name
1FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 28)
No.NameCountTypeFull Name
1FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
2MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:142 , TYR B:152 , SER D:13 , SER D:14 , THR D:15 , GLY D:16 , THR D:17 , GLY D:18 , PRO D:85 , THR D:86 , ARG D:87 , PHE D:88 , SER D:121 , ALA D:122 , GLN D:123 , ASN D:124 , GLY D:127 , HOH D:410BINDING SITE FOR RESIDUE FMN D 401
2AC2SOFTWARETYR A:152 , HIS B:142 , SER C:13 , SER C:14 , THR C:15 , GLY C:16 , THR C:17 , GLY C:18 , PRO C:85 , THR C:86 , ARG C:87 , PHE C:88 , SER C:121 , ALA C:122 , GLN C:123 , ASN C:124 , GLY C:127 , ALA C:171BINDING SITE FOR RESIDUE FMN C 402
3AC3SOFTWARESER B:13 , SER B:14 , THR B:15 , GLY B:16 , THR B:17 , GLY B:18 , PRO B:85 , THR B:86 , ARG B:87 , PHE B:88 , GLY B:89 , SER B:121 , ALA B:122 , GLN B:123 , ASN B:124 , GLY B:127 , ASP C:100 , HIS C:142 , TYR D:152BINDING SITE FOR RESIDUE FMN B 403
4AC4SOFTWARESER A:13 , SER A:14 , THR A:15 , GLY A:16 , THR A:17 , GLY A:18 , PRO A:85 , THR A:86 , ARG A:87 , PHE A:88 , GLY A:89 , SER A:121 , ALA A:122 , GLN A:123 , ASN A:124 , GLY A:127 , HIS D:142BINDING SITE FOR RESIDUE FMN A 404
5AC5SOFTWAREHIS E:142 , SER H:13 , SER H:14 , THR H:15 , GLY H:16 , THR H:17 , GLY H:18 , PRO H:85 , THR H:86 , ARG H:87 , PHE H:88 , GLY H:89 , SER H:121 , ALA H:122 , GLN H:123 , ASN H:124 , GLY H:127 , ALA H:171BINDING SITE FOR RESIDUE FMN H 405
6AC6SOFTWARETYR E:152 , HIS F:142 , SER G:13 , SER G:14 , THR G:15 , GLY G:16 , THR G:17 , GLY G:18 , PRO G:85 , THR G:86 , ARG G:87 , PHE G:88 , SER G:121 , ALA G:122 , GLN G:123 , ASN G:124 , GLY G:127 , HOH G:417BINDING SITE FOR RESIDUE FMN G 406
7AC7SOFTWARESER F:13 , SER F:14 , THR F:15 , GLY F:16 , THR F:17 , GLY F:18 , PRO F:85 , THR F:86 , ARG F:87 , PHE F:88 , GLY F:89 , SER F:121 , ALA F:122 , GLN F:123 , ASN F:124 , GLY F:127 , HOH F:425 , ASP G:100 , HIS G:142 , TYR H:152BINDING SITE FOR RESIDUE FMN F 407
8AC8SOFTWARESER E:13 , SER E:14 , THR E:15 , GLY E:16 , THR E:17 , GLY E:18 , PRO E:85 , THR E:86 , ARG E:87 , PHE E:88 , SER E:121 , ALA E:122 , GLN E:123 , ASN E:124 , GLY E:127 , TYR G:152 , ASP H:100 , HIS H:142BINDING SITE FOR RESIDUE FMN E 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YRH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YRH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YRH)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FLAVODOXIN_LIKEPS50902 Flavodoxin-like domain profile.NQOR_DEIRA7-199
 
 
 
 
 
 
 
  8A:7-199
B:7-199
C:7-199
D:7-199
E:7-199
F:7-199
G:7-199
H:7-199
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FLAVODOXIN_LIKEPS50902 Flavodoxin-like domain profile.NQOR_DEIRA7-199
 
 
 
 
 
 
 
  4A:7-199
B:7-199
C:7-199
D:7-199
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FLAVODOXIN_LIKEPS50902 Flavodoxin-like domain profile.NQOR_DEIRA7-199
 
 
 
 
 
 
 
  4-
-
-
-
E:7-199
F:7-199
G:7-199
H:7-199

(-) Exons   (0, 0)

(no "Exon" information available for 1YRH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:200
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:200
                                                                                                                                                                                                                              200   
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      |  -
           NQOR_DEIRA     4 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrha1 A:4-199 Trp repressor binding protein WrbA                                                                                                                                                  ---- SCOP domains
               CATH domains 1yrhA00 A:4-203  [code=3.40.50.360, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhhhhh...hhhhhhhh.eeeee........hhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FLAVODOXIN_LIKE  PDB: A:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh A   4 PVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    13       |23        33        43        53        63        73        83        93 |     103       113     | 123       133    |  143       153       163       173       183       193       203
                                            21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                   141-MSE                                                          

Chain B from PDB  Type:PROTEIN  Length:200
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:200
                                                                                                                                                                                                                              200   
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      |  -
           NQOR_DEIRA     4 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrhb_ B: Trp repressor binding protein WrbA                                                                                                                                                            SCOP domains
               CATH domains 1yrhB00 B:4-203  [code=3.40.50.360, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhh...ee......hhhhhh.......eeee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FLAVODOXIN_LIKE  PDB: B:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh B   4 PVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    13       |23        33        43        53        63        73        83        93 |     103       113     | 123       133    |  143       153       163       173       183       193       203
                                            21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                   141-MSE                                                          

Chain C from PDB  Type:PROTEIN  Length:201
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:201
                                                                                                                                                                                                                               200   
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       | - 
           NQOR_DEIRA     3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrhc_ C: Trp repressor binding protein WrbA                                                                                                                                                             SCOP domains
               CATH domains 1yrhC00 C:3-203  [code=3.40.50.360, no name defined]                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh......hhhhhhhh.eeeee..ee..eehhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhhhh.ee......hhhhhhh......eeee......hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FLAVODOXIN_LIKE  PDB: C:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh C   3 APVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    12        22        32        42        52        62|       72        82        92  |    102       112      |122       132     | 142       152       162       172       182       192       202 
                                             21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                    141-MSE                                                          

Chain D from PDB  Type:PROTEIN  Length:201
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:201
                                                                                                                                                                                                                               200   
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       | - 
           NQOR_DEIRA     3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrhd_ D: Trp repressor binding protein WrbA                                                                                                                                                             SCOP domains
               CATH domains 1yrhD00 D:3-203  [code=3.40.50.360, no name defined]                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh......hhhhhhhh.eeeeeee......hhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhh....ee...................eeee......hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FLAVODOXIN_LIKE  PDB: D:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh D   3 APVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    12        22        32        42        52        62|       72        82        92  |    102       112      |122       132     | 142       152       162       172       182       192       202 
                                             21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                    141-MSE                                                          

Chain E from PDB  Type:PROTEIN  Length:198
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:198
                                                                                                                                                                                                                              200 
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      | 
           NQOR_DEIRA     4 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG-   -
               SCOP domains d1yrhe_ E: Trp repressor binding protein WrbA                                                                                                                                                          SCOP domains
               CATH domains 1yrhE00 E:4-201  [code=3.40.50.360, no name defined]                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh.......hhhhhhh.eeeee........hhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhhh......eeee......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---FLAVODOXIN_LIKE  PDB: E:7-199 UniProt: 7-199                                                                                                                                                     -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yrh E   4 PVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEG 201
                                    13       |23        33        43        53        63        73        83        93 |     103       113     | 123       133    |  143       153       163       173       183       193        
                                            21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                           
                                                                                                                                                                   141-MSE                                                        

Chain F from PDB  Type:PROTEIN  Length:202
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:202
                                                                                                                                                                                                                                200   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        |-  
           NQOR_DEIRA     2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrhf_ F: Trp repressor binding protein WrbA                                                                                                                                                              SCOP domains
               CATH domains 1yrhF00 F:2-203  [code=3.40.50.360, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhh.......hhhhhhhh.eeeeeee......hhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhhhh.ee......hhhhhh.......eeee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FLAVODOXIN_LIKE  PDB: F:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh F   2 TAPVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    11        21        31        41        51        61 |      71        81        91   |   101       111       121       131      |141       151       161       171       181       191       201  
                                              21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                     141-MSE                                                          

Chain G from PDB  Type:PROTEIN  Length:200
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:200
                                                                                                                                                                                                                              200   
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      |  -
           NQOR_DEIRA     4 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrhg_ G: Trp repressor binding protein WrbA                                                                                                                                                            SCOP domains
               CATH domains 1yrhG00 G:4-203  [code=3.40.50.360, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhhhhhhhh...eeee............hhhhhhhhhhh......hhhhhhhh.eeeee..ee..eehhhhhhhhhhhhhhhh.......eeeee..........hhhhhhhhhhhhhh..ee.......hhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FLAVODOXIN_LIKE  PDB: G:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh G   4 PVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    13       |23        33        43        53        63        73        83        93 |     103       113     | 123       133    |  143       153       163       173       183       193       203
                                            21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                   141-MSE                                                          

Chain H from PDB  Type:PROTEIN  Length:201
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:201
                                                                                                                                                                                                                               200   
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       | - 
           NQOR_DEIRA     3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1yrhh_ H: Trp repressor binding protein WrbA                                                                                                                                                             SCOP domains
               CATH domains 1yrhH00 H:3-203  [code=3.40.50.360, no name defined]                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh.......hhhhhhhh.eeeee........hhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee.......hhhhhhh.....eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FLAVODOXIN_LIKE  PDB: H:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrh H   3 APVKLAIVFYSSTGTGYAmAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAmKDVPEATPADLEWAEAIVFSSPTRFGGATSQmRAFIDTLGGLWSSGKLANKTFSAmTSAQNVNGGQETTLQTLYmTAmHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    12        22        32        42        52        62|       72        82        92  |    102       112      |122       132     | 142       152       162       172       182       192       202 
                                             21-MSE                                    63-MSE                          95-MSE                 119-MSE            138-MSE                                                             
                                                                                                                                                                    141-MSE                                                          

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 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YRH)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (NQOR_DEIRA | Q9RYU4)
molecular function
    GO:0010181    FMN binding    Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0003955    NAD(P)H dehydrogenase (quinone) activity    Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NQOR_DEIRA | Q9RYU41ydg

(-) Related Entries Specified in the PDB File

1ydg SAME PROTEIN WITHOUT FMN RELATED ID: NYSGXRC-T1617 RELATED DB: TARGETDB