1YDG - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TRP REPRESSOR BINDING PROTEIN WRBA

Authors :   J. Gorman, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   23 Dec 04 (Deposition) - 04 Jan 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Tetramer, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Gorman, L. Shapiro
Crystal Structures Of The Tryptophan Repressor Binding Protein Wrba And Complexes With Flavin Mononucleotide.
Protein Sci. V. 14 3004 2005
PubMed-ID: 16322580 | Reference-DOI: 10.1110/PS.051680805
(for further references see the PDB file header)

Molecule 1 - TRP REPRESSOR BINDING PROTEIN WRBA
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	DRA0214
	Organism Scientific	:	DEINOCOCCUS RADIODURANS
	Organism Taxid	:	1299

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 10)

No.	Name	Count	Type	Full Name
1	SO4	10	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER H:13 , SER H:14 , THR H:15 , GLY H:16 , THR H:17 , GLY H:18 , PRO H:85 , SER H:121 , HOH H:1331	BINDING SITE FOR RESIDUE SO4 H 1301
02	AC2	SOFTWARE	SER A:13 , SER A:14 , THR A:15 , GLY A:16 , THR A:17 , GLY A:18 , PRO A:85 , SER A:121 , HOH A:1349	BINDING SITE FOR RESIDUE SO4 A 1302
03	AC3	SOFTWARE	SER B:13 , SER B:14 , THR B:15 , GLY B:16 , THR B:17 , GLY B:18 , PRO B:85 , SER B:121 , HOH B:1318 , HOH B:1322	BINDING SITE FOR RESIDUE SO4 B 1303
04	AC4	SOFTWARE	SER C:13 , SER C:14 , THR C:15 , GLY C:16 , THR C:17 , GLY C:18 , PRO C:85 , SER C:121 , HOH C:1332 , HOH C:1333 , HOH C:1403	BINDING SITE FOR RESIDUE SO4 C 1304
05	AC5	SOFTWARE	SER D:13 , SER D:14 , THR D:15 , GLY D:16 , THR D:17 , GLY D:18 , PRO D:85 , SER D:121 , HOH D:1386	BINDING SITE FOR RESIDUE SO4 D 1305
06	AC6	SOFTWARE	SER E:13 , SER E:14 , THR E:15 , GLY E:16 , THR E:17 , GLY E:18 , PRO E:85 , SER E:121 , HOH E:1392 , HOH E:1403	BINDING SITE FOR RESIDUE SO4 E 1306
07	AC7	SOFTWARE	SER F:13 , SER F:14 , THR F:15 , GLY F:16 , THR F:17 , GLY F:18 , PRO F:85 , SER F:121 , HOH F:1323	BINDING SITE FOR RESIDUE SO4 F 1307
08	AC8	SOFTWARE	SER G:13 , SER G:14 , THR G:15 , GLY G:16 , THR G:17 , GLY G:18 , PRO G:85 , SER G:121 , HOH G:1320	BINDING SITE FOR RESIDUE SO4 G 1308
09	AC9	SOFTWARE	LYS A:110 , ARG H:185 , ARG H:189 , HOH H:1363	BINDING SITE FOR RESIDUE SO4 H 1309
10	BC1	SOFTWARE	LYS B:110 , ARG D:185 , ARG D:189 , HOH D:1410 , HOH D:1461	BINDING SITE FOR RESIDUE SO4 D 1310

(no "SS Bond" information available for 1YDG)

(no "Cis Peptide Bond" information available for 1YDG)

(no "SAP(SNP)/Variant" information available for 1YDG)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NQOR_DEIRA	7-199	8	A:7-199 B:7-199 C:7-199 D:7-199 E:7-199 F:7-199 G:7-199 H:7-199

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NQOR_DEIRA	7-199	4	A:7-199 B:7-199 C:7-199 D:7-199 - - - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NQOR_DEIRA	7-199	4	- - - - E:7-199 F:7-199 G:7-199 H:7-199

(no "Exon" information available for 1YDG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:201
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:201
                                                                                                                                                                                                                               200   
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       | - 
           NQOR_DEIRA     3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydga_ A: Trp repressor binding protein WrbA                                                                                                                                                             SCOP domains
               CATH domains 1ydgA00 A:3-203  [code=3.40.50.360, no name defined]                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhh...ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FLAVODOXIN_LIKE  PDB: A:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg A   3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain B from PDB  Type:PROTEIN  Length:202
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:202
                                                                                                                                                                                                                                200   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        |-  
           NQOR_DEIRA     2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydgb_ B: Trp repressor binding protein WrbA                                                                                                                                                              SCOP domains
               CATH domains 1ydgB00 B:2-203  [code=3.40.50.360, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhh..ee......hhhhhhhh......eee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FLAVODOXIN_LIKE  PDB: B:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg B   2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain C from PDB  Type:PROTEIN  Length:202
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:202
                                                                                                                                                                                                                                200   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        |-  
           NQOR_DEIRA     2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydgc_ C: Trp repressor binding protein WrbA                                                                                                                                                              SCOP domains
               CATH domains 1ydgC00 C:2-203  [code=3.40.50.360, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhhh..ee......hhhhhhh......eeee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FLAVODOXIN_LIKE  PDB: C:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg C   2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain D from PDB  Type:PROTEIN  Length:202
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:202
                                                                                                                                                                                                                                200   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        |-  
           NQOR_DEIRA     2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydgd_ D: Trp repressor binding protein WrbA                                                                                                                                                              SCOP domains
               CATH domains 1ydgD00 D:2-203  [code=3.40.50.360, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhh.hhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhh..ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FLAVODOXIN_LIKE  PDB: D:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg D   2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain E from PDB  Type:PROTEIN  Length:204
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:204
                             1                                                                                                                                                                                                    200   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199|   
           NQOR_DEIRA     - -MTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydge_ E: Trp repressor binding protein WrbA                                                                                                                                                                SCOP domains
               CATH domains 1ydgE00 E:0-203  [code=3.40.50.360, no name defined]                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.......hhhhhhhhhhhhh...ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------FLAVODOXIN_LIKE  PDB: E:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ydg E   0 SLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain F from PDB  Type:PROTEIN  Length:201
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:201
                                                                                                                                                                                                                               200   
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       | - 
           NQOR_DEIRA     3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydgf_ F: Trp repressor binding protein WrbA                                                                                                                                                             SCOP domains
               CATH domains 1ydgF00 F:3-203  [code=3.40.50.360, no name defined]                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhh..ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FLAVODOXIN_LIKE  PDB: F:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg F   3 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain G from PDB  Type:PROTEIN  Length:202
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:202
                                                                                                                                                                                                                                200   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        |-  
           NQOR_DEIRA     2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydgg_ G: Trp repressor binding protein WrbA                                                                                                                                                              SCOP domains
               CATH domains 1ydgG00 G:2-203  [code=3.40.50.360, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeee..eehhhhhhhhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhh..ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FLAVODOXIN_LIKE  PDB: G:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg G   2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain H from PDB  Type:PROTEIN  Length:202
 aligned with NQOR_DEIRA | Q9RYU4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:202
                                                                                                                                                                                                                                200   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        |-  
           NQOR_DEIRA     2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLG---   -
               SCOP domains d1ydgh_ H: Trp repressor binding protein WrbA                                                                                                                                                              SCOP domains
               CATH domains 1ydgH00 H:2-203  [code=3.40.50.360, no name defined]                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhh......hhhhhhhh.eeeeeee......hhhhhhhhh.hhhhhhh......eeeeeeee.......hhhhhhhhhhhhh...ee......hhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FLAVODOXIN_LIKE  PDB: H:7-199 UniProt: 7-199                                                                                                                                                     ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ydg H   2 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Flavoproteins (208)

Family: WrbA-like (12)

Protein domain: Trp repressor binding protein WrbA (8)

Deinococcus radiodurans [TaxId: 1299] (2)

1a	d1ydga_	A:
1b	d1ydgb_	B:
1c	d1ydgc_	C:
1d	d1ydgd_	D:
1e	d1ydge_	E:
1f	d1ydgf_	F:
1g	d1ydgg_	G:
1h	d1ydgh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.360, no name defined] (150)

Deinococcus radiodurans. Organism_taxid: 1299. (2)

1a	1ydgA00	A:3-203
1b	1ydgF00	F:3-203
1c	1ydgB00	B:2-203
1d	1ydgC00	C:2-203
1e	1ydgD00	D:2-203
1f	1ydgG00	G:2-203
1g	1ydgH00	H:2-203
1h	1ydgE00	E:0-203

(no "Pfam Domain" information available for 1YDG)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (NQOR_DEIRA | Q9RYU4)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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(no "Related Entries Specified in the PDB File" available for 1YDG)

Description

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Ligands, Modified Residues, Ions (1, 10)

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