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(-) Description

Title :  STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN THROMBOSPONDIN-2
 
Authors :  C. B. Carlson, D. A. Bernstein, D. S. Annis, T. M. Misenheimer, B. A. Hann D. F. Mosher, J. L. Keck
Date :  26 Jan 05  (Deposition) - 27 Sep 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Egf; Ca(2+)-Binding Domains; Lectin Domain; Disulfide, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Carlson, D. A. Bernstein, D. S. Annis, T. M. Misenheimer, B. L. Hannah, D. F. Mosher, J. L. Keck
Structure Of The Calcium-Rich Signature Domain Of Human Thrombospondin-2
Nat. Struct. Mol. Biol. V. 12 910 2005
PubMed-ID: 16186819  |  Reference-DOI: 10.1038/NSMB997

(-) Compounds

Molecule 1 - THROMBOSPONDIN-2
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PVL1392
    Expression System Strain: SF21
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: C-TERMINAL DOMAIN
    Gene: THBS2, TSP2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 42)

Asymmetric/Biological Unit (4, 42)
No.NameCountTypeFull Name
1CA30Ligand/IonCALCIUM ION
2MAN1Ligand/IonALPHA-D-MANNOSE
3MSE5Mod. Amino AcidSELENOMETHIONINE
4NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (37, 37)

Asymmetric Unit (37, 37)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENAG A:2 , LEU A:689 , ASN A:710BINDING SITE FOR RESIDUE NAG A 1
02AC2SOFTWARENAG A:1 , MAN A:3 , VAL A:706BINDING SITE FOR RESIDUE NAG A 2
03AC3SOFTWARENAG A:2 , ILE A:944BINDING SITE FOR RESIDUE MAN A 3
04AC4SOFTWARENAG A:5 , ASP A:866 , ASN A:1069 , THR A:1071 , HOH A:1294BINDING SITE FOR RESIDUE NAG A 4
05AC5SOFTWARENAG A:4BINDING SITE FOR RESIDUE NAG A 5
06AC6SOFTWAREGLY A:552 , SER A:555 , PRO A:557 , GLY A:570 , TRP A:572BINDING SITE FOR RESIDUE NAG A 6
07AC7SOFTWAREASN A:584 , HIS A:587BINDING SITE FOR RESIDUE NAG A 7
08AC8SOFTWAREASP A:937 , ASP A:939 , ASP A:946 , CYS A:948 , ASN A:951 , ILE A:954 , SER A:955BINDING SITE FOR RESIDUE CA A 1182
09AC9SOFTWAREASP A:935 , ASP A:937 , ASP A:939 , ILE A:941 , ASP A:946 , HOH A:1266BINDING SITE FOR RESIDUE CA A 1183
10BC1SOFTWAREASP A:922 , ASP A:924 , ASP A:926 , ARG A:928 , ASP A:930BINDING SITE FOR RESIDUE CA A 1184
11BC2SOFTWAREASP A:899 , ASP A:901 , ASP A:903 , VAL A:905 , ASP A:910 , HOH A:1268BINDING SITE FOR RESIDUE CA A 1185
12BC3SOFTWAREASP A:901 , ASP A:903 , ASP A:910 , CYS A:912 , VAL A:915 , ASN A:917BINDING SITE FOR RESIDUE CA A 1186
13BC4SOFTWAREASP A:888 , ASP A:890 , ASP A:897 , ASP A:899 , ASN A:902 , HOH A:1235BINDING SITE FOR RESIDUE CA A 1187
14BC5SOFTWAREASP A:886 , ASP A:888 , ASP A:890 , GLN A:892 , ASP A:897BINDING SITE FOR RESIDUE CA A 1188
15BC6SOFTWAREASP A:894 , ASP A:897 , ASP A:900 , ASP A:907 , HOH A:1226 , HOH A:1249BINDING SITE FOR RESIDUE CA A 1189
16BC7SOFTWAREASP A:865 , ASP A:867 , ASP A:874 , CYS A:876 , ILE A:879 , ASN A:881BINDING SITE FOR RESIDUE CA A 1190
17BC8SOFTWAREASP A:863 , ASP A:865 , ASP A:867 , HIS A:869 , ASP A:874 , HOH A:1325BINDING SITE FOR RESIDUE CA A 1191
18BC9SOFTWAREASP A:850 , ASP A:852 , ASP A:859 , ASN A:861 , HOH A:1316BINDING SITE FOR RESIDUE CA A 1192
19CC1SOFTWAREASP A:848 , ASP A:850 , ASP A:852 , VAL A:854 , ASP A:859 , HOH A:1313BINDING SITE FOR RESIDUE CA A 1193
20CC2SOFTWAREASN A:993 , ASP A:1021 , ASP A:1023 , SER A:1156 , HOH A:1283BINDING SITE FOR RESIDUE CA A 1194
21CC3SOFTWAREASP A:1019 , ASP A:1021 , GLN A:1044 , ASP A:1106 , HOH A:1220 , HOH A:1309BINDING SITE FOR RESIDUE CA A 1195
22CC4SOFTWAREASP A:1021 , ASP A:1022 , ASP A:1023 , GLN A:1047 , HOH A:1252 , HOH A:1311BINDING SITE FOR RESIDUE CA A 1196
23CC5SOFTWAREASP A:789 , ASP A:791 , ASN A:793 , GLU A:795 , HOH A:1314BINDING SITE FOR RESIDUE CA A 1197
24CC6SOFTWAREASP A:827 , ASP A:829 , ASP A:836 , CYS A:838 , VAL A:841 , ASN A:843BINDING SITE FOR RESIDUE CA A 1198
25CC7SOFTWAREASP A:825 , ASP A:827 , ASP A:829 , VAL A:831 , ASP A:836 , HOH A:1255BINDING SITE FOR RESIDUE CA A 1199
26CC8SOFTWAREASP A:804 , ASP A:806 , ASP A:813 , CYS A:815 , VAL A:818 , ASN A:820BINDING SITE FOR RESIDUE CA A 1200
27CC9SOFTWAREASP A:802 , ASP A:804 , ASP A:806 , VAL A:808 , ASP A:813 , HOH A:1288BINDING SITE FOR RESIDUE CA A 1201
28DC1SOFTWAREASP A:768 , ASP A:770 , ASP A:777 , CYS A:779 , VAL A:782 , ASN A:784BINDING SITE FOR RESIDUE CA A 1202
29DC2SOFTWAREASP A:766 , ASP A:768 , ASP A:770 , VAL A:772 , ASP A:777 , HOH A:1310BINDING SITE FOR RESIDUE CA A 1203
30DC3SOFTWAREASP A:745 , ASP A:747 , ASP A:754 , CYS A:756 , LEU A:759 , ASN A:761BINDING SITE FOR RESIDUE CA A 1204
31DC4SOFTWAREASP A:743 , ASP A:745 , ASP A:747 , VAL A:749 , ASP A:754 , HOH A:1320BINDING SITE FOR RESIDUE CA A 1205
32DC5SOFTWAREASP A:730 , ASP A:732 , ASP A:734 , ILE A:736 , ASP A:741 , CA A:1207 , HOH A:1307BINDING SITE FOR RESIDUE CA A 1206
33DC6SOFTWAREASP A:732 , ASP A:734 , ASP A:741 , ASP A:743 , ASN A:746 , CA A:1206 , HOH A:1304BINDING SITE FOR RESIDUE CA A 1207
34DC7SOFTWAREASP A:738 , ASP A:741 , ASP A:744 , ASP A:751 , HOH A:1271 , HOH A:1277BINDING SITE FOR RESIDUE CA A 1208
35DC8SOFTWAREASP A:694 , ASP A:696 , ASP A:698 , TRP A:700 , ASP A:718 , HOH A:1213BINDING SITE FOR RESIDUE CA A 1209
36DC9SOFTWAREASP A:696 , ASP A:698 , ASP A:718 , CYS A:720 , LEU A:723 , ASN A:725BINDING SITE FOR RESIDUE CA A 1210
37EC1SOFTWAREASP A:590 , LEU A:591 , GLU A:593 , ASN A:612 , THR A:613 , GLY A:616BINDING SITE FOR RESIDUE CA A 1211

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1A:553 -A:564
2A:558 -A:574
3A:577 -A:588
4A:594 -A:610
5A:601 -A:619
6A:622 -A:646
7A:652 -A:665
8A:659 -A:678
9A:680 -A:691
10A:707 -A:715
11A:720 -A:740
12A:756 -A:776
13A:779 -A:799
14A:815 -A:835
15A:838 -A:858
16A:876 -A:896
17A:912 -A:932
18A:948 -A:1169

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:673 -Pro A:674
2Gln A:1053 -Pro A:1054

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YO8)

(-) PROSITE Motifs  (4, 11)

Asymmetric/Biological Unit (4, 11)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EGF_3PS50026 EGF-like domain profile.TSP2_HUMAN549-589
648-692		  1-
A:648-692
2EGF_2PS01186 EGF-like domain signature 2.TSP2_HUMAN678-691  1A:678-691
3TSP3PS51234 Thrombospondin type-3 (TSP3) repeat profile.TSP2_HUMAN693-728
729-764
765-787
788-823
824-846
847-884
885-920
921-956		  8A:693-728
A:729-764
A:765-787
A:788-823
A:824-846
A:847-884
A:885-920
A:921-956
4TSP_CTERPS51236 Thrombospondin C-terminal domain profile.TSP2_HUMAN960-1172  1A:960-1171

(-) Exons   (13, 13)

Asymmetric/Biological Unit (13, 13)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003667871ENSE00001815322chr6:169654139-16965408555TSP2_HUMAN-00--
1.2ENST000003667872ENSE00001336871chr6:169653991-169653819173TSP2_HUMAN-00--
1.4ENST000003667874ENSE00001442629chr6:169650901-16965082874TSP2_HUMAN1-18180--
1.5bENST000003667875bENSE00001336870chr6:169649068-169648512557TSP2_HUMAN18-2031860--
1.6aENST000003667876aENSE00001336868chr6:169646376-16964629285TSP2_HUMAN204-232290--
1.7ENST000003667877ENSE00001336866chr6:169642053-169641857197TSP2_HUMAN232-297660--
1.8ENST000003667878ENSE00001336864chr6:169640687-169640547141TSP2_HUMAN298-344470--
1.9ENST000003667879ENSE00001336862chr6:169639790-16963969497TSP2_HUMAN345-377330--
1.10ENST0000036678710ENSE00001336857chr6:169637890-169637720171TSP2_HUMAN377-434580--
1.11bENST0000036678711bENSE00001336856chr6:169637441-169637265177TSP2_HUMAN434-493600--
1.12aENST0000036678712aENSE00001336854chr6:169635002-169634829174TSP2_HUMAN493-551591A:551-5511
1.13ENST0000036678713ENSE00001336853chr6:169633112-169632985128TSP2_HUMAN551-593431A:551-59343
1.14ENST0000036678714ENSE00001336852chr6:169632911-169632759153TSP2_HUMAN594-644511A:594-64451
1.15ENST0000036678715ENSE00001336851chr6:169632293-169632075219TSP2_HUMAN645-717731A:645-71773
1.16ENST0000036678716ENSE00001336849chr6:169629774-169629667108TSP2_HUMAN718-753361A:718-75336
1.17ENST0000036678717ENSE00001336848chr6:169628376-169628217160TSP2_HUMAN754-807541A:754-80754
1.18ENST0000036678718ENSE00001336846chr6:169626393-169626275119TSP2_HUMAN807-846401A:807-84640
1.19ENST0000036678719ENSE00001336844chr6:169625474-169625240235TSP2_HUMAN847-925791A:847-92579
1.20aENST0000036678720aENSE00001336843chr6:169623570-169623343228TSP2_HUMAN925-1001771A:925-100177
1.21ENST0000036678721ENSE00002188217chr6:169622563-169622292272TSP2_HUMAN1001-1091911A:1001-109191
1.22ENST0000036678722ENSE00002178208chr6:169621622-16962152598TSP2_HUMAN1092-1124331A:1092-112433
1.23ENST0000036678723ENSE00002141048chr6:169620432-169620293140TSP2_HUMAN1124-1171481A:1124-117148
1.24aENST0000036678724aENSE00001442614chr6:169617924-1696158752050TSP2_HUMAN1171-117221A:1171-11711

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:621
 aligned with TSP2_HUMAN | P35442 from UniProtKB/Swiss-Prot  Length:1172

    Alignment length:621
                                   560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170 
          TSP2_HUMAN    551 DGCLSNPCFPGAQCSSFPDGSWSCGSCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVMADSGPIYDQTYAGGRLGLFVFSQEMVYFSDLKYECRD 1171
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------EGF_CA-1yo8A02 A:590-646                                 -----EGF_3-1yo8A01 A:652-691                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A03 A:921-956             -----------------TSP_C-1yo8A10 A:974-1171                                                                                                                                                                               Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A04 A:921-956             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A05 A:921-956             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A06 A:921-956             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A07 A:921-956             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A08 A:921-956             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-1yo8A09 A:921-956             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (7)
         Sec.struct. author hhhhhh.......eee.....eee...................................eee....eee......eee...ee..hhhhhh....eee..............eeeee........eeeee...eee....eee...............................................................................hhhhh..................hhhhh...............................hhhhh.................................hhhhh...............................hhhhh..................hhhhh........hhhhh...............eeeee............eeeehhhheeee......eeeeeeeee..eeeeeeeee.......eeeeeeeeee..eeeeeeee...ee.........ee..eeeeeeee.....hhhhhhhhhh.......eeeeee............eeeeeee.....eeeeeeee..eeeee...ee......eeeeeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) EGF_3  PDB: - UniProt: 549-589         ----------------------------------------------------------EGF_3  PDB: A:648-692 UniProt: 648-692       TSP3  PDB: A:693-728                TSP3  PDB: A:729-764                TSP3  PDB: A:765-787   TSP3  PDB: A:788-823                TSP3  PDB: A:824-846   TSP3  PDB: A:847-884 UniProt: 847-884 TSP3  PDB: A:885-920                TSP3  PDB: A:921-956                ---TSP_CTER  PDB: A:960-1171 UniProt: 960-1172                                                                                                                                                                          PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------EGF_2         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) 1------------------------------------------Exon 1.14  PDB: A:594-644 UniProt: 594-644         Exon 1.15  PDB: A:645-717 UniProt: 645-717                               Exon 1.16  PDB: A:718-753           Exon 1.17  PDB: A:754-807 UniProt: 754-807            ---------------------------------------Exon 1.19  PDB: A:847-925 UniProt: 847-925                                     ---------------------------------------------------------------------------Exon 1.21  PDB: A:1001-1091 UniProt: 1001-1091                                             Exon 1.22  PDB: A:1092-1124      ----------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) Exon 1.13  PDB: A:551-593 UniProt: 551-593 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.18  PDB: A:807-846               ------------------------------------------------------------------------------Exon 1.20a  PDB: A:925-1001 UniProt: 925-1001                                --------------------------------------------------------------------------------------------------------------------------Exon 1.23  PDB: A:1124-1171 UniProt: 1124-1171   Transcript 1 (2)
                1yo8 A  551 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPmYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQmVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVmWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVmADSGPIYDQTYAGGRLGLFVFSQEmVYFSDLKYECRD 1171
                                   560       570       580       590       600       610       620       630       640       650       660       670    |  680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960   |   970       980       990      1000      1010      1020      1030      1040|     1050      1060      1070      1080      1090      1100      1110      1120      1130   |  1140      1150      1160      1170 
                                                                                                                                                      675-MSE                                                                                                                                                                                                                                                                                          964-MSE                                                                     1041-MSE                                                                                     1134-MSE                 1159-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1YO8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YO8)

(-) Pfam Domains  (4, 10)

Asymmetric/Biological Unit
(-)
Clan: EGF (60)
(-)
Clan: no clan defined [family: TSP_3] (3)
(-)
Family: TSP_3 (3)
(-)
Homo sapiens (Human) (3)
3aTSP_3-1yo8A03A:921-956
3bTSP_3-1yo8A04A:921-956
3cTSP_3-1yo8A05A:921-956
3dTSP_3-1yo8A06A:921-956
3eTSP_3-1yo8A07A:921-956
3fTSP_3-1yo8A08A:921-956
3gTSP_3-1yo8A09A:921-956
(-)
Clan: no clan defined [family: TSP_C] (3)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (TSP2_HUMAN | P35442)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0016525    negative regulation of angiogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis.
    GO:0051965    positive regulation of synapse assembly    Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
cellular component
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0031091    platelet alpha granule    A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG).
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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        TSP2_HUMAN | P35442: 2rhp

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