1YO8 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN THROMBOSPONDIN-2
• Keywords: EGF; CA(2+)-BINDING DOMAINS; LECTIN DOMAIN; DISULFIDE, CELL
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1YO8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THROMBOSPONDIN-2	A	621	4804	40
2	Ligand		B	3	0	39
3	Ligand		C	2	0	28
4	Ligand	THROMBOSPONDIN-2	A	32	0	58
5	Water			116	0	116
total				774	4804	281

Proteins

Unit 1

ASP 551 GLY 552 CYS 553 LEU 554 SER 555 ASN 556 PRO 557 CYS 558 PHE 559 PRO 560 GLY 561 ALA 562 GLN 563 CYS 564 SER 565 SER 566 PHE 567 PRO 568 ASP 569 GLY 570 SER 571 TRP 572 SER 573 CYS 574 GLY 575 PHE 576 CYS 577 PRO 578 VAL 579 GLY 580 PHE 581 LEU 582 GLY 583 ASN 584 GLY 585 THR 586 HIS 587 CYS 588 GLU 589 ASP 590 LEU 591 ASP 592 GLU 593 CYS 594 ALA 595 LEU 596 VAL 597 PRO 598 ASP 599 ILE 600 CYS 601 PHE 602 SER 603 THR 604 SER 605 LYS 606 VAL 607 PRO 608 ARG 609 CYS 610 VAL 611 ASN 612 THR 613 GLN 614 PRO 615 GLY 616 PHE 617 HIS 618 CYS 619 LEU 620 PRO 621 CYS 622 PRO 623 PRO 624 ARG 625 TYR 626 ARG 627 GLY 628 ASN 629 GLN 630 PRO 631 VAL 632 GLY 633 VAL 634 GLY 635 LEU 636 GLU 637 ALA 638 ALA 639 LYS 640 THR 641 GLU 642 LYS 643 GLN 644 VAL 645 CYS 646 GLU 647 PRO 648 GLU 649 ASN 650 PRO 651 CYS 652 LYS 653 ASP 654 LYS 655 THR 656 HIS 657 ASN 658 CYS 659 HIS 660 LYS 661 HIS 662 ALA 663 GLU 664 CYS 665 ILE 666 TYR 667 LEU 668 GLY 669 HIS 670 PHE 671 SER 672 ASP 673 PRO 674 MSE 675 TYR 676 LYS 677 CYS 678 GLU 679 CYS 680 GLN 681 THR 682 GLY 683 TYR 684 ALA 685 GLY 686 ASP 687 GLY 688 LEU 689 ILE 690 CYS 691 GLY 692 GLU 693 ASP 694 SER 695 ASP 696 LEU 697 ASP 698 GLY 699 TRP 700 PRO 701 ASN 702 LEU 703 ASN 704 LEU 705 VAL 706 CYS 707 ALA 708 THR 709 ASN 710 ALA 711 THR 712 TYR 713 HIS 714 CYS 715 ILE 716 LYS 717 ASP 718 ASN 719 CYS 720 PRO 721 HIS 722 LEU 723 PRO 724 ASN 725 SER 726 GLY 727 GLN 728 GLU 729 ASP 730 PHE 731 ASP 732 LYS 733 ASP 734 GLY 735 ILE 736 GLY 737 ASP 738 ALA 739 CYS 740 ASP 741 ASP 742 ASP 743 ASP 744 ASP 745 ASN 746 ASP 747 GLY 748 VAL 749 THR 750 ASP 751 GLU 752 LYS 753 ASP 754 ASN 755 CYS 756 GLN 757 LEU 758 LEU 759 PHE 760 ASN 761 PRO 762 ARG 763 GLN 764 ALA 765 ASP 766 TYR 767 ASP 768 LYS 769 ASP 770 GLU 771 VAL 772 GLY 773 ASP 774 ARG 775 CYS 776 ASP 777 ASN 778 CYS 779 PRO 780 TYR 781 VAL 782 HIS 783 ASN 784 PRO 785 ALA 786 GLN 787 ILE 788 ASP 789 THR 790 ASP 791 ASN 792 ASN 793 GLY 794 GLU 795 GLY 796 ASP 797 ALA 798 CYS 799 SER 800 VAL 801 ASP 802 ILE 803 ASP 804 GLY 805 ASP 806 ASP 807 VAL 808 PHE 809 ASN 810 GLU 811 ARG 812 ASP 813 ASN 814 CYS 815 PRO 816 TYR 817 VAL 818 TYR 819 ASN 820 THR 821 ASP 822 GLN 823 ARG 824 ASP 825 THR 826 ASP 827 GLY 828 ASP 829 GLY 830 VAL 831 GLY 832 ASP 833 HIS 834 CYS 835 ASP 836 ASN 837 CYS 838 PRO 839 LEU 840 VAL 841 HIS 842 ASN 843 PRO 844 ASP 845 GLN 846 THR 847 ASP 848 VAL 849 ASP 850 ASN 851 ASP 852 LEU 853 VAL 854 GLY 855 ASP 856 GLN 857 CYS 858 ASP 859 ASN 860 ASN 861 GLU 862 ASP 863 ILE 864 ASP 865 ASP 866 ASP 867 GLY 868 HIS 869 GLN 870 ASN 871 ASN 872 GLN 873 ASP 874 ASN 875 CYS 876 PRO 877 TYR 878 ILE 879 SER 880 ASN 881 ALA 882 ASN 883 GLN 884 ALA 885 ASP 886 HIS 887 ASP 888 ARG 889 ASP 890 GLY 891 GLN 892 GLY 893 ASP 894 ALA 895 CYS 896 ASP 897 PRO 898 ASP 899 ASP 900 ASP 901 ASN 902 ASP 903 GLY 904 VAL 905 PRO 906 ASP 907 ASP 908 ARG 909 ASP 910 ASN 911 CYS 912 ARG 913 LEU 914 VAL 915 PHE 916 ASN 917 PRO 918 ASP 919 GLN 920 GLU 921 ASP 922 LEU 923 ASP 924 GLY 925 ASP 926 GLY 927 ARG 928 GLY 929 ASP 930 ILE 931 CYS 932 LYS 933 ASP 934 ASP 935 PHE 936 ASP 937 ASN 938 ASP 939 ASN 940 ILE 941 PRO 942 ASP 943 ILE 944 ASP 945 ASP 946 VAL 947 CYS 948 PRO 949 GLU 950 ASN 951 ASN 952 ALA 953 ILE 954 SER 955 GLU 956 THR 957 ASP 958 PHE 959 ARG 960 ASN 961 PHE 962 GLN 963 MSE 964 VAL 965 PRO 966 LEU 967 ASP 968 PRO 969 LYS 970 GLY 971 THR 972 THR 973 GLN 974 ILE 975 ASP 976 PRO 977 ASN 978 TRP 979 VAL 980 ILE 981 ARG 982 HIS 983 GLN 984 GLY 985 LYS 986 GLU 987 LEU 988 VAL 989 GLN 990 THR 991 ALA 992 ASN 993 SER 994 ASP 995 PRO 996 GLY 997 ILE 998 ALA 999 VAL 1000 GLY 1001 PHE 1002 ASP 1003 GLU 1004 PHE 1005 GLY 1006 SER 1007 VAL 1008 ASP 1009 PHE 1010 SER 1011 GLY 1012 THR 1013 PHE 1014 TYR 1015 VAL 1016 ASN 1017 THR 1018 ASP 1019 ARG 1020 ASP 1021 ASP 1022 ASP 1023 TYR 1024 ALA 1025 GLY 1026 PHE 1027 VAL 1028 PHE 1029 GLY 1030 TYR 1031 GLN 1032 SER 1033 SER 1034 SER 1035 ARG 1036 PHE 1037 TYR 1038 VAL 1039 VAL 1040 MSE 1041 TRP 1042 LYS 1043 GLN 1044 VAL 1045 THR 1046 GLN 1047 THR 1048 TYR 1049 TRP 1050 GLU 1051 ASP 1052 GLN 1053 PRO 1054 THR 1055 ARG 1056 ALA 1057 TYR 1058 GLY 1059 TYR 1060 SER 1061 GLY 1062 VAL 1063 SER 1064 LEU 1065 LYS 1066 VAL 1067 VAL 1068 ASN 1069 SER 1070 THR 1071 THR 1072 GLY 1073 THR 1074 GLY 1075 GLU 1076 HIS 1077 LEU 1078 ARG 1079 ASN 1080 ALA 1081 LEU 1082 TRP 1083 HIS 1084 THR 1085 GLY 1086 ASN 1087 THR 1088 PRO 1089 GLY 1090 GLN 1091 VAL 1092 ARG 1093 THR 1094 LEU 1095 TRP 1096 HIS 1097 ASP 1098 PRO 1099 ARG 1100 ASN 1101 ILE 1102 GLY 1103 TRP 1104 LYS 1105 ASP 1106 TYR 1107 THR 1108 ALA 1109 TYR 1110 ARG 1111 TRP 1112 HIS 1113 LEU 1114 THR 1115 HIS 1116 ARG 1117 PRO 1118 LYS 1119 THR 1120 GLY 1121 TYR 1122 ILE 1123 ARG 1124 VAL 1125 LEU 1126 VAL 1127 HIS 1128 GLU 1129 GLY 1130 LYS 1131 GLN 1132 VAL 1133 MSE 1134 ALA 1135 ASP 1136 SER 1137 GLY 1138 PRO 1139 ILE 1140 TYR 1141 ASP 1142 GLN 1143 THR 1144 TYR 1145 ALA 1146 GLY 1147 GLY 1148 ARG 1149 LEU 1150 GLY 1151 LEU 1152 PHE 1153 VAL 1154 PHE 1155 SER 1156 GLN 1157 GLU 1158 MSE 1159 VAL 1160 TYR 1161 PHE 1162 SER 1163 ASP 1164 LEU 1165 LYS 1166 TYR 1167 GLU 1168 CYS 1169 ARG 1170 ASP 1171

Ligands

Unit 2	NAG 1 NAG 2 MAN 3
Unit 3	NAG 1 NAG 2
Unit 4	NAG 6 NAG 7 CA 1182 CA 1183 CA 1184 CA 1185 CA 1186 CA 1187 CA 1188 CA 1189 CA 1190 CA 1191 CA 1192 CA 1193 CA 1194 CA 1195 CA 1196 CA 1197 CA 1198 CA 1199 CA 1200 CA 1201 CA 1202 CA 1203 CA 1204 CA 1205 CA 1206 CA 1207 CA 1208 CA 1209 CA 1210 CA 1211