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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   THE THROMBOSPONDIN-1 POLYMORPHISM ASN700SER ASSOCIATED WITH CORNOARY ARTERY DISEASE CAUSES LOCAL AND LONG-RANGING CHANGES IN PROTEIN STRUCTURE

Authors :   C. B. Carlson, J. L. Keck, D. F. Mosher

Date :   09 Oct 07 (Deposition) - 27 May 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym./Biol. Unit : A

Keywords :   Extracellular Matrix, Calcium-Binding, Glycosylated, Jelly-Roll, Egf- Like, Lectin-Like, Cell Adhesion, Egf-Like Domain, Glycoprotein, Heparin-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. B. Carlson, Y. Liu, J. L. Keck, D. F. Mosher
Influences Of The N700S Thrombospondin-1 Polymorphism On Protein Structure And Stability.
J. Biol. Chem. V. 283 20069 2008
PubMed-ID: 18499674 | Reference-DOI: 10.1074/JBC.M800223200

Molecule 1 - THROMBOSPONDIN-2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Plasmid	:	PCOCO
	Expression System Strain	:	HIGH 5
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	SIGNATURE DOMAIN
	Gene	:	THBS2, TSP2
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 34)

No.	Name	Count	Type	Full Name
1	CA	30	Ligand/Ion	CALCIUM ION
2	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:866 , ASN A:1069 , THR A:1071 , THR A:1144	BINDING SITE FOR RESIDUE NAG A 4
02	AC2	SOFTWARE	GLY A:552 , SER A:555 , GLY A:570 , TRP A:572	BINDING SITE FOR RESIDUE NAG A 6
03	AC3	SOFTWARE	ASP A:937 , ASP A:939 , ASP A:946 , CYS A:948 , ASN A:951 , ILE A:954 , SER A:955	BINDING SITE FOR RESIDUE CA A 1173
04	AC4	SOFTWARE	ASP A:935 , ASP A:937 , ASP A:939 , ILE A:941 , ASP A:946	BINDING SITE FOR RESIDUE CA A 2
05	AC5	SOFTWARE	ASP A:922 , ASP A:924 , ASP A:926 , ARG A:928 , ASP A:930	BINDING SITE FOR RESIDUE CA A 3
06	AC6	SOFTWARE	ASP A:899 , ASP A:901 , ASP A:903 , ASP A:910 , HOH A:1204	BINDING SITE FOR RESIDUE CA A 1174
07	AC7	SOFTWARE	ASP A:901 , ASP A:903 , ASP A:910 , CYS A:912 , ASN A:917	BINDING SITE FOR RESIDUE CA A 1175
08	AC8	SOFTWARE	ASP A:888 , ASP A:890 , ASP A:897 , ASP A:899 , ASN A:902	BINDING SITE FOR RESIDUE CA A 1176
09	AC9	SOFTWARE	ASP A:886 , ASP A:888 , ASP A:890 , GLN A:892 , ASP A:897	BINDING SITE FOR RESIDUE CA A 7
10	BC1	SOFTWARE	ASP A:894 , ASP A:897 , ASP A:900 , ASP A:907 , HOH A:1219	BINDING SITE FOR RESIDUE CA A 8
11	BC2	SOFTWARE	ASP A:865 , ASP A:867 , ASP A:874 , CYS A:876 , ILE A:879 , SER A:880 , ASN A:881	BINDING SITE FOR RESIDUE CA A 9
12	BC3	SOFTWARE	ASP A:863 , ASP A:865 , ASP A:867 , HIS A:869 , ASP A:874	BINDING SITE FOR RESIDUE CA A 10
13	BC4	SOFTWARE	ASP A:850 , ASP A:852 , ASP A:859 , ASN A:861	BINDING SITE FOR RESIDUE CA A 11
14	BC5	SOFTWARE	ASP A:848 , ASP A:850 , ASP A:852 , ASP A:859 , HOH A:1229	BINDING SITE FOR RESIDUE CA A 12
15	BC6	SOFTWARE	ASN A:993 , ASP A:1021 , ASP A:1023 , SER A:1156 , HOH A:1196	BINDING SITE FOR RESIDUE CA A 13
16	BC7	SOFTWARE	ASP A:1019 , ASP A:1021 , GLN A:1044 , ASP A:1106 , HOH A:1220	BINDING SITE FOR RESIDUE CA A 14
17	BC8	SOFTWARE	ASP A:1021 , ASP A:1022 , ASP A:1023 , GLN A:1047	BINDING SITE FOR RESIDUE CA A 15
18	BC9	SOFTWARE	ASP A:789 , ASP A:791 , ASN A:793 , GLU A:795	BINDING SITE FOR RESIDUE CA A 16
19	CC1	SOFTWARE	ASP A:827 , ASP A:829 , ASP A:836 , CYS A:838 , ASN A:843	BINDING SITE FOR RESIDUE CA A 17
20	CC2	SOFTWARE	ASP A:825 , ASP A:827 , ASP A:829 , ASP A:836	BINDING SITE FOR RESIDUE CA A 18
21	CC3	SOFTWARE	ASP A:804 , ASP A:806 , ASP A:813 , CYS A:815 , ASN A:820	BINDING SITE FOR RESIDUE CA A 19
22	CC4	SOFTWARE	ASP A:802 , ASP A:804 , ASP A:806 , ASP A:813	BINDING SITE FOR RESIDUE CA A 20
23	CC5	SOFTWARE	ASP A:768 , ASP A:770 , ASP A:777 , CYS A:779 , ASN A:784	BINDING SITE FOR RESIDUE CA A 21
24	CC6	SOFTWARE	ASP A:766 , ASP A:768 , ASP A:770 , ASP A:777	BINDING SITE FOR RESIDUE CA A 22
25	CC7	SOFTWARE	ASP A:745 , ASP A:747 , ASP A:754 , CYS A:756 , LEU A:759 , ASN A:761	BINDING SITE FOR RESIDUE CA A 23
26	CC8	SOFTWARE	ASP A:743 , ASP A:745 , ASP A:747 , ASP A:754	BINDING SITE FOR RESIDUE CA A 24
27	CC9	SOFTWARE	ASP A:730 , ASP A:732 , ASP A:734 , ILE A:736 , ASP A:741	BINDING SITE FOR RESIDUE CA A 25
28	DC1	SOFTWARE	ASP A:732 , ASP A:734 , ASP A:741 , ASP A:743 , ASN A:746	BINDING SITE FOR RESIDUE CA A 26
29	DC2	SOFTWARE	ASP A:738 , ASP A:741 , ASP A:744 , ASP A:751	BINDING SITE FOR RESIDUE CA A 27
30	DC3	SOFTWARE	ASP A:694 , ASP A:696 , ASP A:698 , TRP A:700 , ASP A:718	BINDING SITE FOR RESIDUE CA A 28
31	DC4	SOFTWARE	ASP A:696 , ASP A:698 , ASP A:718 , CYS A:720 , LEU A:723 , ASN A:725	BINDING SITE FOR RESIDUE CA A 29
32	DC5	SOFTWARE	ASP A:590 , LEU A:591 , GLU A:593 , ASN A:612 , THR A:613 , GLY A:616	BINDING SITE FOR RESIDUE CA A 30

Asymmetric/Biological Unit

No.	Residues
1	A:553	-	A:564
2	A:558	-	A:574
3	A:577	-	A:588
4	A:594	-	A:610
5	A:601	-	A:619
6	A:622	-	A:646
7	A:652	-	A:665
8	A:659	-	A:678
9	A:680	-	A:691
10	A:707	-	A:715
11	A:720	-	A:740
12	A:756	-	A:776
13	A:779	-	A:799
14	A:815	-	A:835
15	A:838	-	A:858
16	A:876	-	A:896
17	A:912	-	A:932
18	A:948	-	A:1169

Asymmetric/Biological Unit

No.	Residues
1	Asp A:673	-	Pro A:674
2	Gln A:1053	-	Pro A:1054

(no "SAP(SNP)/Variant" information available for 2RHP)

Asymmetric/Biological Unit (4, 11)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TSP2_HUMAN	549-589 648-692	1	- A:648-692
2	EGF_2	PS01186	EGF-like domain signature 2.	TSP2_HUMAN	678-691	1	A:678-691
3	TSP3	PS51234	Thrombospondin type-3 (TSP3) repeat profile.	TSP2_HUMAN	693-728 729-764 765-787 788-823 824-846 847-884 885-920 921-956	8	A:693-728 A:729-764 A:765-787 A:788-823 A:824-846 A:847-884 A:885-920 A:921-956
4	TSP_CTER	PS51236	Thrombospondin C-terminal domain profile.	TSP2_HUMAN	960-1172	1	A:960-1172

Asymmetric/Biological Unit (13, 13)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000366787	1	ENSE00001815322	chr6:169654139-169654085	55	TSP2_HUMAN	-	0	0	-	-
1.2	ENST00000366787	2	ENSE00001336871	chr6:169653991-169653819	173	TSP2_HUMAN	-	0	0	-	-
1.4	ENST00000366787	4	ENSE00001442629	chr6:169650901-169650828	74	TSP2_HUMAN	1-18	18	0	-	-
1.5b	ENST00000366787	5b	ENSE00001336870	chr6:169649068-169648512	557	TSP2_HUMAN	18-203	186	0	-	-
1.6a	ENST00000366787	6a	ENSE00001336868	chr6:169646376-169646292	85	TSP2_HUMAN	204-232	29	0	-	-
1.7	ENST00000366787	7	ENSE00001336866	chr6:169642053-169641857	197	TSP2_HUMAN	232-297	66	0	-	-
1.8	ENST00000366787	8	ENSE00001336864	chr6:169640687-169640547	141	TSP2_HUMAN	298-344	47	0	-	-
1.9	ENST00000366787	9	ENSE00001336862	chr6:169639790-169639694	97	TSP2_HUMAN	345-377	33	0	-	-
1.10	ENST00000366787	10	ENSE00001336857	chr6:169637890-169637720	171	TSP2_HUMAN	377-434	58	0	-	-
1.11b	ENST00000366787	11b	ENSE00001336856	chr6:169637441-169637265	177	TSP2_HUMAN	434-493	60	0	-	-
1.12a	ENST00000366787	12a	ENSE00001336854	chr6:169635002-169634829	174	TSP2_HUMAN	493-551	59	1	A:551-551	1
1.13	ENST00000366787	13	ENSE00001336853	chr6:169633112-169632985	128	TSP2_HUMAN	551-593	43	1	A:551-593	43
1.14	ENST00000366787	14	ENSE00001336852	chr6:169632911-169632759	153	TSP2_HUMAN	594-644	51	1	A:594-644	51
1.15	ENST00000366787	15	ENSE00001336851	chr6:169632293-169632075	219	TSP2_HUMAN	645-717	73	1	A:645-717	73
1.16	ENST00000366787	16	ENSE00001336849	chr6:169629774-169629667	108	TSP2_HUMAN	718-753	36	1	A:718-753	36
1.17	ENST00000366787	17	ENSE00001336848	chr6:169628376-169628217	160	TSP2_HUMAN	754-807	54	1	A:754-807	54
1.18	ENST00000366787	18	ENSE00001336846	chr6:169626393-169626275	119	TSP2_HUMAN	807-846	40	1	A:807-846	40
1.19	ENST00000366787	19	ENSE00001336844	chr6:169625474-169625240	235	TSP2_HUMAN	847-925	79	1	A:847-925	79
1.20a	ENST00000366787	20a	ENSE00001336843	chr6:169623570-169623343	228	TSP2_HUMAN	925-1001	77	1	A:925-1001	77
1.21	ENST00000366787	21	ENSE00002188217	chr6:169622563-169622292	272	TSP2_HUMAN	1001-1091	91	1	A:1001-1091	91
1.22	ENST00000366787	22	ENSE00002178208	chr6:169621622-169621525	98	TSP2_HUMAN	1092-1124	33	1	A:1092-1124	33
1.23	ENST00000366787	23	ENSE00002141048	chr6:169620432-169620293	140	TSP2_HUMAN	1124-1171	48	1	A:1124-1171	48
1.24a	ENST00000366787	24a	ENSE00001442614	chr6:169617924-169615875	2050	TSP2_HUMAN	1171-1172	2	1	A:1171-1172	2

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:622
 aligned with TSP2_HUMAN | P35442 from UniProtKB/Swiss-Prot  Length:1172

    Alignment length:622
                                   560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170  
          TSP2_HUMAN    551 DGCLSNPCFPGAQCSSFPDGSWSCGSCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVMADSGPIYDQTYAGGRLGLFVFSQEMVYFSDLKYECRDI 1172
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------EGF_CA-2rhpA02 A:590-646                                 -----EGF_3-2rhpA01 A:652-691                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA03 A:921-956             -----------------TSP_C-2rhpA10 A:974-1172                                                                                                                                                                                Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA04 A:921-956             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA05 A:921-956             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA06 A:921-956             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA07 A:921-956             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA08 A:921-956             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSP_3-2rhpA09 A:921-956             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (7)
         Sec.struct. author hhhhhh.......eee.....eee...................................eee....eee......eee...ee..hhhhhh....eee..............eeeee........eeeee...eee....eee...........................................hhhhh...............................hhhhh..................hhhhh...............................hhhhh.................................hhhhh..................hhhhh........hhhhh..................hhhhh........hhhhh...............eeeee............eeeehhhheeee......eeeeeeeee..eeeeeeeee.......eeeeeeeeee..eeeeeeee...ee.........ee..eeeeeeee.....hhhhhhhhhh.......eeeeee............eeeeeee.....eeeeeeee..eeeee...ee......eeeeeeee....eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) EGF_3  PDB: - UniProt: 549-589         ----------------------------------------------------------EGF_3  PDB: A:648-692 UniProt: 648-692       TSP3  PDB: A:693-728                TSP3  PDB: A:729-764                TSP3  PDB: A:765-787   TSP3  PDB: A:788-823                TSP3  PDB: A:824-846   TSP3  PDB: A:847-884 UniProt: 847-884 TSP3  PDB: A:885-920                TSP3  PDB: A:921-956                ---TSP_CTER  PDB: A:960-1172 UniProt: 960-1172                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------EGF_2         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1------------------------------------------Exon 1.14  PDB: A:594-644 UniProt: 594-644         Exon 1.15  PDB: A:645-717 UniProt: 645-717                               Exon 1.16  PDB: A:718-753           Exon 1.17  PDB: A:754-807 UniProt: 754-807            ---------------------------------------Exon 1.19  PDB: A:847-925 UniProt: 847-925                                     ---------------------------------------------------------------------------Exon 1.21  PDB: A:1001-1091 UniProt: 1001-1091                                             Exon 1.22  PDB: A:1092-1124      ----------------------------------------------1. Transcript 1 (1)
           Transcript 1 (2) Exon 1.13  PDB: A:551-593 UniProt: 551-593 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.18  PDB: A:807-846               ------------------------------------------------------------------------------Exon 1.20a  PDB: A:925-1001 UniProt: 925-1001                                --------------------------------------------------------------------------------------------------------------------------Exon 1.23  PDB: A:1124-1171 UniProt: 1124-1171  - Transcript 1 (2)
                2rhp A  551 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPSLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPLDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVMADSGPIYDQTYAGGRLGLFVFSQEMVYFSDLKYECRDI 1172
                                   560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2RHP)

(no "CATH Domain" information available for 2RHP)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: EGF (60)

Family: EGF_3 (4)

Homo sapiens (Human) (2)

EGF_3-2rhpA01

A:652-691

Family: EGF_CA (18)

Homo sapiens (Human) (14)

EGF_CA-2rhpA02

A:590-646

Clan: no clan defined [family: TSP_3] (3)

Family: TSP_3 (3)

Homo sapiens (Human) (3)

3a	TSP_3-2rhpA03	A:921-956
3b	TSP_3-2rhpA04	A:921-956
3c	TSP_3-2rhpA05	A:921-956
3d	TSP_3-2rhpA06	A:921-956
3e	TSP_3-2rhpA07	A:921-956
3f	TSP_3-2rhpA08	A:921-956
3g	TSP_3-2rhpA09	A:921-956

Clan: no clan defined [family: TSP_C] (3)

Family: TSP_C (3)

Homo sapiens (Human) (3)

TSP_C-2rhpA10

A:974-1172

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (TSP2_HUMAN | P35442)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0016525	negative regulation of angiogenesis	Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis.
	GO:0051965	positive regulation of synapse assembly	Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
cellular component
	GO:0005604	basement membrane	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0031091	platelet alpha granule	A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG).
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Asp A:673 - Pro A:674	[ RasMol ]
		Gln A:1053 - Pro A:1054	[ RasMol ]

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	2rhp
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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		Structural Neighbours	:	CE \| VAST
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	TSP2_HUMAN \| P35442
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	TSP2_HUMAN \| P35442
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UniProtKB/Swiss-Prot
	TSP2_HUMAN \| P35442	:	1yo8

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 34)

Sites (32, 32)

SS Bonds (18, 18)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 11)

Exons (13, 13)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (4, 10)

Gene Ontology (11, 11)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File