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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF THE T=1 PARTICLE OF BROME MOSAIC VIRUS
 
Authors :  S. B. Larson, R. W. Lucas, A. Mcpherson
Date :  22 Dec 04  (Deposition) - 18 Jan 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4  (2x)
Keywords :  Structural Transition, Proteolysis, Bmv, Almv, Symmetry, Assembly, Icosahedral Virus, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. B. Larson, R. W. Lucas, A. Mcpherson
Crystallographic Structure Of The T=1 Particle Of Brome Mosaic Virus.
J. Mol. Biol. V. 346 815 2005
PubMed-ID: 15713465  |  Reference-DOI: 10.1016/J.JMB.2004.12.015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2, 3, 4
    Organism Scientific: BROME MOSAIC VIRUS
    Organism Taxid: 12302
    Synonym: CAPSID PROTEIN, CP

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324252627282930
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ1234
Biological Unit 1 (2x): ABCDEFGHIJKLMNOPQRSTUVWXYZ1234

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YC6)

(-) Sites  (0, 0)

(no "Site" information available for 1YC6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YC6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YC6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YC6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YC6)

(-) Exons   (0, 0)

(no "Exon" information available for 1YC6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc61_ 1: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6100 1:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 1  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain 2 from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc62_ 2: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6200 2:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 2  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain 3 from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc63_ 3: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6300 3:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 3  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain 4 from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc64_ 4: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6400 4:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 4  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain A from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6a_ A: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6A00 A:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 A  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain B from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6b_ B: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6B00 B:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 B  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain C from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6c_ C: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6C00 C:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 C  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain D from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6d_ D: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6D00 D:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 D  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain E from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6e_ E: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6E00 E:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 E  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain F from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6f_ F: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6F00 F:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 F  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain G from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6g_ G: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6G00 G:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 G  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain H from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6h_ H: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6H00 H:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 H  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain I from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6i_ I: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6I00 I:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 I  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain J from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6j_ J: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6J00 J:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 J  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain K from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6k_ K: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6K00 K:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 K  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain L from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6l_ L: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6L00 L:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 L  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain M from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6m_ M: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6M00 M:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 M  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain N from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6n_ N: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6N00 N:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 N  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain O from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6o_ O: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6O00 O:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 O  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain P from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6p_ P: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6P00 P:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 P  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain Q from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6q_ Q: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6Q00 Q:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 Q  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain R from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6r_ R: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6R00 R:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 R  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain S from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6s_ S: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6S00 S:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 S  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain T from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6t_ T: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6T00 T:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 T  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain U from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6u_ U: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6U00 U:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 U  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain V from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6v_ V: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6V00 V:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 V  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain W from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6w_ W: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6W00 W:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 W  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain X from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6x_ X: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6X00 X:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee......hhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 X  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain Y from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6y_ Y: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6Y00 Y:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 Y  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    


Chain Z from PDB  Type:PROTEIN  Length:154
 aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:154
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
            CAPSD_BMV    36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
               SCOP domains d1yc6z_ Z: Cucumovirus coat protein                                                                                                                        SCOP domains
               CATH domains 1yc6Z00 Z:36-189  [code=2.60.120.220, no name defined]                                                                                                     CATH domains
           Pfam domains (1) Bromo_coat-1yc6Z01 Z:36-188                                                                                                                              - Pfam domains (1)
           Pfam domains (2) Bromo_coat-1yc6Z02 Z:36-188                                                                                                                              - Pfam domains (2)
           Pfam domains (3) Bromo_coat-1yc6Z03 Z:36-188                                                                                                                              - Pfam domains (3)
           Pfam domains (4) Bromo_coat-1yc6Z04 Z:36-188                                                                                                                              - Pfam domains (4)
           Pfam domains (5) Bromo_coat-1yc6Z05 Z:36-188                                                                                                                              - Pfam domains (5)
           Pfam domains (6) Bromo_coat-1yc6Z06 Z:36-188                                                                                                                              - Pfam domains (6)
           Pfam domains (7) Bromo_coat-1yc6Z07 Z:36-188                                                                                                                              - Pfam domains (7)
           Pfam domains (8) Bromo_coat-1yc6Z08 Z:36-188                                                                                                                              - Pfam domains (8)
           Pfam domains (9) Bromo_coat-1yc6Z09 Z:36-188                                                                                                                              - Pfam domains (9)
          Pfam domains (10) Bromo_coat-1yc6Z10 Z:36-188                                                                                                                              - Pfam domains (10)
          Pfam domains (11) Bromo_coat-1yc6Z11 Z:36-188                                                                                                                              - Pfam domains (11)
          Pfam domains (12) Bromo_coat-1yc6Z12 Z:36-188                                                                                                                              - Pfam domains (12)
          Pfam domains (13) Bromo_coat-1yc6Z13 Z:36-188                                                                                                                              - Pfam domains (13)
          Pfam domains (14) Bromo_coat-1yc6Z14 Z:36-188                                                                                                                              - Pfam domains (14)
          Pfam domains (15) Bromo_coat-1yc6Z15 Z:36-188                                                                                                                              - Pfam domains (15)
          Pfam domains (16) Bromo_coat-1yc6Z16 Z:36-188                                                                                                                              - Pfam domains (16)
          Pfam domains (17) Bromo_coat-1yc6Z17 Z:36-188                                                                                                                              - Pfam domains (17)
          Pfam domains (18) Bromo_coat-1yc6Z18 Z:36-188                                                                                                                              - Pfam domains (18)
          Pfam domains (19) Bromo_coat-1yc6Z19 Z:36-188                                                                                                                              - Pfam domains (19)
          Pfam domains (20) Bromo_coat-1yc6Z20 Z:36-188                                                                                                                              - Pfam domains (20)
          Pfam domains (21) Bromo_coat-1yc6Z21 Z:36-188                                                                                                                              - Pfam domains (21)
          Pfam domains (22) Bromo_coat-1yc6Z22 Z:36-188                                                                                                                              - Pfam domains (22)
          Pfam domains (23) Bromo_coat-1yc6Z23 Z:36-188                                                                                                                              - Pfam domains (23)
          Pfam domains (24) Bromo_coat-1yc6Z24 Z:36-188                                                                                                                              - Pfam domains (24)
          Pfam domains (25) Bromo_coat-1yc6Z25 Z:36-188                                                                                                                              - Pfam domains (25)
          Pfam domains (26) Bromo_coat-1yc6Z26 Z:36-188                                                                                                                              - Pfam domains (26)
          Pfam domains (27) Bromo_coat-1yc6Z27 Z:36-188                                                                                                                              - Pfam domains (27)
          Pfam domains (28) Bromo_coat-1yc6Z28 Z:36-188                                                                                                                              - Pfam domains (28)
          Pfam domains (29) Bromo_coat-1yc6Z29 Z:36-188                                                                                                                              - Pfam domains (29)
          Pfam domains (30) Bromo_coat-1yc6Z30 Z:36-188                                                                                                                              - Pfam domains (30)
         Sec.struct. author .............eeeeeeeee........eeeee...hhhhh........eeeeeeeeee.......eeeeeee...hhhhhhhhh...ee......eeee.........hhhh.eeeeeee........eeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc6 Z  36 AAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 30)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 30)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Jelly Rolls (1293)
(-)
Homologous Superfamily: [code=2.60.120.220, no name defined] (6)
(-)
Brome mosaic virus. Organism_taxid: 12302 (1)
1a1yc61001:36-189
1b1yc62002:36-189
1c1yc6G00G:36-189
1d1yc6H00H:36-189
1e1yc6I00I:36-189
1f1yc6J00J:36-189
1g1yc6K00K:36-189
1h1yc6L00L:36-189
1i1yc6M00M:36-189
1j1yc6N00N:36-189
1k1yc6O00O:36-189
1l1yc6P00P:36-189
1m1yc63003:36-189
1n1yc6Q00Q:36-189
1o1yc6R00R:36-189
1p1yc6S00S:36-189
1q1yc6T00T:36-189
1r1yc6U00U:36-189
1s1yc6V00V:36-189
1t1yc6W00W:36-189
1u1yc6X00X:36-189
1v1yc6Y00Y:36-189
1w1yc6Z00Z:36-189
1x1yc64004:36-189
1y1yc6A00A:36-189
1z1yc6B00B:36-189
1aa1yc6C00C:36-189
1ab1yc6D00D:36-189
1ac1yc6E00E:36-189
1ad1yc6F00F:36-189

(-) Pfam Domains  (1, 30)

Asymmetric Unit
(-)
Clan: Viral_ssRNA_CP (106)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain 1,2,3,4,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z   (CAPSD_BMV | P03602)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0039617    T=3 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.
    GO:0044165    host cell endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019013    viral nucleocapsid    The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  1yc6
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  CAPSD_BMV | P03602
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAPSD_BMV | P03602: 1js9 3j7l 3j7m 3j7n

(-) Related Entries Specified in the PDB File

1js9 THE NATIVE T=3 BROME MOSAIC VIRUS STRUCTURE.