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1YC6
Asym. Unit
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Asym.Unit (716 KB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF THE T=1 PARTICLE OF BROME MOSAIC VIRUS
Authors
:
S. B. Larson, R. W. Lucas, A. Mcpherson
Date
:
22 Dec 04 (Deposition) - 18 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4 (2x)
Keywords
:
Structural Transition, Proteolysis, Bmv, Almv, Symmetry, Assembly, Icosahedral Virus, Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. B. Larson, R. W. Lucas, A. Mcpherson
Crystallographic Structure Of The T=1 Particle Of Brome Mosaic Virus.
J. Mol. Biol. V. 346 815 2005
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 30)
Info
All SCOP Domains
1a: SCOP_d1yc61_ (1:)
1b: SCOP_d1yc62_ (2:)
1c: SCOP_d1yc6g_ (G:)
1d: SCOP_d1yc6h_ (H:)
1e: SCOP_d1yc6i_ (I:)
1f: SCOP_d1yc6j_ (J:)
1g: SCOP_d1yc6k_ (K:)
1h: SCOP_d1yc6l_ (L:)
1i: SCOP_d1yc6m_ (M:)
1j: SCOP_d1yc6n_ (N:)
1k: SCOP_d1yc6o_ (O:)
1l: SCOP_d1yc6p_ (P:)
1m: SCOP_d1yc63_ (3:)
1n: SCOP_d1yc6q_ (Q:)
1o: SCOP_d1yc6r_ (R:)
1p: SCOP_d1yc6s_ (S:)
1q: SCOP_d1yc6t_ (T:)
1r: SCOP_d1yc6u_ (U:)
1s: SCOP_d1yc6v_ (V:)
1t: SCOP_d1yc6w_ (W:)
1u: SCOP_d1yc6x_ (X:)
1v: SCOP_d1yc6y_ (Y:)
1w: SCOP_d1yc6z_ (Z:)
1x: SCOP_d1yc64_ (4:)
1y: SCOP_d1yc6a_ (A:)
1z: SCOP_d1yc6b_ (B:)
1aa: SCOP_d1yc6c_ (C:)
1ab: SCOP_d1yc6d_ (D:)
1ac: SCOP_d1yc6e_ (E:)
1ad: SCOP_d1yc6f_ (F:)
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)
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)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Bromoviridae-like VP
(6)
Protein domain
:
Cucumovirus coat protein
(5)
BMV (Brome mosaic virus) [TaxId: 12302]
(2)
1a
d1yc61_
1:
1b
d1yc62_
2:
1c
d1yc6g_
G:
1d
d1yc6h_
H:
1e
d1yc6i_
I:
1f
d1yc6j_
J:
1g
d1yc6k_
K:
1h
d1yc6l_
L:
1i
d1yc6m_
M:
1j
d1yc6n_
N:
1k
d1yc6o_
O:
1l
d1yc6p_
P:
1m
d1yc63_
3:
1n
d1yc6q_
Q:
1o
d1yc6r_
R:
1p
d1yc6s_
S:
1q
d1yc6t_
T:
1r
d1yc6u_
U:
1s
d1yc6v_
V:
1t
d1yc6w_
W:
1u
d1yc6x_
X:
1v
d1yc6y_
Y:
1w
d1yc6z_
Z:
1x
d1yc64_
4:
1y
d1yc6a_
A:
1z
d1yc6b_
B:
1aa
d1yc6c_
C:
1ab
d1yc6d_
D:
1ac
d1yc6e_
E:
1ad
d1yc6f_
F:
[
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]
CATH Domains
(1, 30)
Info
all CATH domains
1a: CATH_1yc6100 (1:36-189)
1b: CATH_1yc6200 (2:36-189)
1c: CATH_1yc6G00 (G:36-189)
1d: CATH_1yc6H00 (H:36-189)
1e: CATH_1yc6I00 (I:36-189)
1f: CATH_1yc6J00 (J:36-189)
1g: CATH_1yc6K00 (K:36-189)
1h: CATH_1yc6L00 (L:36-189)
1i: CATH_1yc6M00 (M:36-189)
1j: CATH_1yc6N00 (N:36-189)
1k: CATH_1yc6O00 (O:36-189)
1l: CATH_1yc6P00 (P:36-189)
1m: CATH_1yc6300 (3:36-189)
1n: CATH_1yc6Q00 (Q:36-189)
1o: CATH_1yc6R00 (R:36-189)
1p: CATH_1yc6S00 (S:36-189)
1q: CATH_1yc6T00 (T:36-189)
1r: CATH_1yc6U00 (U:36-189)
1s: CATH_1yc6V00 (V:36-189)
1t: CATH_1yc6W00 (W:36-189)
1u: CATH_1yc6X00 (X:36-189)
1v: CATH_1yc6Y00 (Y:36-189)
1w: CATH_1yc6Z00 (Z:36-189)
1x: CATH_1yc6400 (4:36-189)
1y: CATH_1yc6A00 (A:36-189)
1z: CATH_1yc6B00 (B:36-189)
1aa: CATH_1yc6C00 (C:36-189)
1ab: CATH_1yc6D00 (D:36-189)
1ac: CATH_1yc6E00 (E:36-189)
1ad: CATH_1yc6F00 (F:36-189)
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)
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(
)
(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.220, no name defined]
(6)
Brome mosaic virus. Organism_taxid: 12302
(1)
1a
1yc6100
1:36-189
1b
1yc6200
2:36-189
1c
1yc6G00
G:36-189
1d
1yc6H00
H:36-189
1e
1yc6I00
I:36-189
1f
1yc6J00
J:36-189
1g
1yc6K00
K:36-189
1h
1yc6L00
L:36-189
1i
1yc6M00
M:36-189
1j
1yc6N00
N:36-189
1k
1yc6O00
O:36-189
1l
1yc6P00
P:36-189
1m
1yc6300
3:36-189
1n
1yc6Q00
Q:36-189
1o
1yc6R00
R:36-189
1p
1yc6S00
S:36-189
1q
1yc6T00
T:36-189
1r
1yc6U00
U:36-189
1s
1yc6V00
V:36-189
1t
1yc6W00
W:36-189
1u
1yc6X00
X:36-189
1v
1yc6Y00
Y:36-189
1w
1yc6Z00
Z:36-189
1x
1yc6400
4:36-189
1y
1yc6A00
A:36-189
1z
1yc6B00
B:36-189
1aa
1yc6C00
C:36-189
1ab
1yc6D00
D:36-189
1ac
1yc6E00
E:36-189
1ad
1yc6F00
F:36-189
[
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]
Pfam Domains
(1, 30)
Info
all PFAM domains
1a: PFAM_Bromo_coat_1yc6Z01 (Z:36-188)
1b: PFAM_Bromo_coat_1yc6Z02 (Z:36-188)
1c: PFAM_Bromo_coat_1yc6Z03 (Z:36-188)
1d: PFAM_Bromo_coat_1yc6Z04 (Z:36-188)
1e: PFAM_Bromo_coat_1yc6Z05 (Z:36-188)
1f: PFAM_Bromo_coat_1yc6Z06 (Z:36-188)
1g: PFAM_Bromo_coat_1yc6Z07 (Z:36-188)
1h: PFAM_Bromo_coat_1yc6Z08 (Z:36-188)
1i: PFAM_Bromo_coat_1yc6Z09 (Z:36-188)
1j: PFAM_Bromo_coat_1yc6Z10 (Z:36-188)
1k: PFAM_Bromo_coat_1yc6Z11 (Z:36-188)
1l: PFAM_Bromo_coat_1yc6Z12 (Z:36-188)
1m: PFAM_Bromo_coat_1yc6Z13 (Z:36-188)
1n: PFAM_Bromo_coat_1yc6Z14 (Z:36-188)
1o: PFAM_Bromo_coat_1yc6Z15 (Z:36-188)
1p: PFAM_Bromo_coat_1yc6Z16 (Z:36-188)
1q: PFAM_Bromo_coat_1yc6Z17 (Z:36-188)
1r: PFAM_Bromo_coat_1yc6Z18 (Z:36-188)
1s: PFAM_Bromo_coat_1yc6Z19 (Z:36-188)
1t: PFAM_Bromo_coat_1yc6Z20 (Z:36-188)
1u: PFAM_Bromo_coat_1yc6Z21 (Z:36-188)
1v: PFAM_Bromo_coat_1yc6Z22 (Z:36-188)
1w: PFAM_Bromo_coat_1yc6Z23 (Z:36-188)
1x: PFAM_Bromo_coat_1yc6Z24 (Z:36-188)
1y: PFAM_Bromo_coat_1yc6Z25 (Z:36-188)
1z: PFAM_Bromo_coat_1yc6Z26 (Z:36-188)
1aa: PFAM_Bromo_coat_1yc6Z27 (Z:36-188)
1ab: PFAM_Bromo_coat_1yc6Z28 (Z:36-188)
1ac: PFAM_Bromo_coat_1yc6Z29 (Z:36-188)
1ad: PFAM_Bromo_coat_1yc6Z30 (Z:36-188)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Viral_ssRNA_CP
(106)
Family
:
Bromo_coat
(3)
Brome mosaic virus (BMV)
(2)
1a
Bromo_coat-1yc6Z01
Z:36-188
1b
Bromo_coat-1yc6Z02
Z:36-188
1c
Bromo_coat-1yc6Z03
Z:36-188
1d
Bromo_coat-1yc6Z04
Z:36-188
1e
Bromo_coat-1yc6Z05
Z:36-188
1f
Bromo_coat-1yc6Z06
Z:36-188
1g
Bromo_coat-1yc6Z07
Z:36-188
1h
Bromo_coat-1yc6Z08
Z:36-188
1i
Bromo_coat-1yc6Z09
Z:36-188
1j
Bromo_coat-1yc6Z10
Z:36-188
1k
Bromo_coat-1yc6Z11
Z:36-188
1l
Bromo_coat-1yc6Z12
Z:36-188
1m
Bromo_coat-1yc6Z13
Z:36-188
1n
Bromo_coat-1yc6Z14
Z:36-188
1o
Bromo_coat-1yc6Z15
Z:36-188
1p
Bromo_coat-1yc6Z16
Z:36-188
1q
Bromo_coat-1yc6Z17
Z:36-188
1r
Bromo_coat-1yc6Z18
Z:36-188
1s
Bromo_coat-1yc6Z19
Z:36-188
1t
Bromo_coat-1yc6Z20
Z:36-188
1u
Bromo_coat-1yc6Z21
Z:36-188
1v
Bromo_coat-1yc6Z22
Z:36-188
1w
Bromo_coat-1yc6Z23
Z:36-188
1x
Bromo_coat-1yc6Z24
Z:36-188
1y
Bromo_coat-1yc6Z25
Z:36-188
1z
Bromo_coat-1yc6Z26
Z:36-188
1aa
Bromo_coat-1yc6Z27
Z:36-188
1ab
Bromo_coat-1yc6Z28
Z:36-188
1ac
Bromo_coat-1yc6Z29
Z:36-188
1ad
Bromo_coat-1yc6Z30
Z:36-188
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Asym.Unit (716 KB)
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