Chain A from PDB Type:PROTEIN Length:149
aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot Length:189
Alignment length:149
50 60 70 80 90 100 110 120 130 140 150 160 170 180
CAPSD_BMV 41 KAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
SCOP domains d1js9a_ A: Cucumovirus coat protein SCOP domains
CATH domains 1js9A00 A:41-189 [code=2.60.120.220, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........eeee.............eeee....hhhhhhhhhhh..eeeeeee...........eeee........hhhhhh...ee......eeee................eeee............eeeeeee..hhhhh...... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1js9 A 41 KAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
50 60 70 80 90 100 110 120 130 140 150 160 170 180
Chain B from PDB Type:PROTEIN Length:165
aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot Length:189
Alignment length:165
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
CAPSD_BMV 25 ARVQPVIVEPLAAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
SCOP domains d1js9b_ B: Cucumovirus coat protein SCOP domains
CATH domains 1js9B00 B:25-189 [code=2.60.120.220, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........................eee..ee........eeeee...hhhhhhhhhhh.....eeeeeee.......eeeeeee....hhhhhhh....ee......eeee..............eeeeeee........eeeeeeee............... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1js9 B 25 ARVQPVIVEPLAAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
Chain C from PDB Type:PROTEIN Length:189
aligned with CAPSD_BMV | P03602 from UniProtKB/Swiss-Prot Length:189
Alignment length:189
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
CAPSD_BMV 1 MSTSGTGKMTRAQRRAAARRNRWTARVQPVIVEPLAAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
SCOP domains d1js9c_ C: Cucumovirus coat protein SCOP domains
CATH domains -------------------------------------1js9C01 C:38-189 [code=2.60.120.220, no name defined] CATH domains
Pfam domains (1) -Bromo_coat-1js9C01 C:2-188 - Pfam domains (1)
Pfam domains (2) -Bromo_coat-1js9C02 C:2-188 - Pfam domains (2)
Pfam domains (3) -Bromo_coat-1js9C03 C:2-188 - Pfam domains (3)
Sec.struct. author ................................................eeee.............eee..........hhhhhh..eeeeeee..........eeeee......hhhhhhh....ee......eeee.........hhhhh..eeeee...........eeeeeee............. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1js9 C 1 MSTSGTGKMTRAQRRAAARRNRWTARVQPVIVEPLAAGQGKAIKAIAGYSISKWEASSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRIKACVAEKQAQAEAAFQVALAVADSSKEVVAAMYTDAFRGATLGDLLNLQIYLYASEAVPAKAVVVHLEVEHVRPTFDDFFTPVYR 189
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
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(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |