1Y1P - JenaLib

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Title :   X-RAY STRUCTURE OF ALDEHYDE REDUCTASE WITH NADPH

Authors :   S. Kamitori, K. Kita

Date :   19 Nov 04 (Deposition) - 06 Sep 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Rossmann Fold, Short Chain Dehydrogenase Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Kamitori, A. Iguchi, A. Ohtaki, M. Yamada, K. Kita
X-Ray Structures Of Nadph-Dependent Carbonyl Reductase From Sporobolomyces Salmonicolor Provide Insights Into Stereoselective Reductions Of Carbonyl Compounds
J. Mol. Biol. V. 352 551 2005
PubMed-ID: 16095619 | Reference-DOI: 10.1016/J.JMB.2005.07.011
(for further references see the PDB file header)

Molecule 1 - ALDEHYDE REDUCTASE II
	Chains	:	A, B
	EC Number	:	1.1.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUCAR2
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SPORIDIOBOLUS SALMONICOLOR
	Organism Taxid	:	5005
	Synonym	:	ARII

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 9)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	AMP	2	Ligand/Ion	ADENOSINE MONOPHOSPHATE
3	NMN	2	Ligand/Ion	BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
4	PO4	2	Ligand/Ion	PHOSPHATE ION
5	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 5)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
3	NMN	1	Ligand/Ion	BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
4	PO4	1	Ligand/Ion	PHOSPHATE ION
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 4)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
3	NMN	1	Ligand/Ion	BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
4	PO4	1	Ligand/Ion	PHOSPHATE ION
5	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:324 , ARG A:328 , HOH A:1068 , HOH A:1107	BINDING SITE FOR RESIDUE SO4 A 801
2	AC2	SOFTWARE	ARG B:324 , ARG B:328 , HOH B:2038 , HOH B:2189 , HOH B:2318	BINDING SITE FOR RESIDUE SO4 B 802
3	AC3	SOFTWARE	HIS A:27 , GLU A:30 , GLN A:31 , PHE A:214 , HOH A:1099 , HOH A:1175 , HOH A:1253	BINDING SITE FOR RESIDUE ACT A 803
4	AC4	SOFTWARE	PHE A:23 , VAL A:24 , ILE A:91 , SER A:93 , THR A:131 , SER A:132 , SER A:133 , TYR A:177 , LYS A:181 , PRO A:206 , ASN A:207 , THR A:209 , SER A:222 , THR A:223 , AMP A:1002 , HOH A:1019 , HOH A:1129	BINDING SITE FOR RESIDUE NMN A 1001
5	AC5	SOFTWARE	GLY A:19 , ASN A:21 , GLY A:22 , PHE A:23 , ARG A:44 , MET A:72 , ALA A:92 , SER A:93 , VAL A:95 , SER A:222 , NMN A:1001 , PO4 A:1003 , HOH A:1031 , HOH A:1032 , HOH A:1063 , HOH A:1067 , HOH A:1084 , HOH A:1086 , HOH A:1129 , HOH A:1156 , HOH A:1179	BINDING SITE FOR RESIDUE AMP A 1002
6	AC6	SOFTWARE	ASN A:21 , ARG A:44 , LYS A:48 , AMP A:1002 , HOH A:1031 , HOH A:1152 , HOH A:1157 , HOH A:1341	BINDING SITE FOR RESIDUE PO4 A 1003
7	AC7	SOFTWARE	GLY B:22 , PHE B:23 , VAL B:24 , SER B:93 , THR B:131 , SER B:132 , SER B:133 , TYR B:177 , LYS B:181 , PRO B:206 , ASN B:207 , THR B:209 , THR B:223 , AMP B:2002 , HOH B:2089 , HOH B:2319	BINDING SITE FOR RESIDUE NMN B 2001
8	AC8	SOFTWARE	ASN B:21 , GLY B:22 , PHE B:23 , ARG B:44 , MET B:72 , SER B:93 , VAL B:94 , NMN B:2001 , PO4 B:2003 , HOH B:2125 , HOH B:2348	BINDING SITE FOR RESIDUE AMP B 2002
9	AC9	SOFTWARE	ASN B:21 , LYS B:48 , AMP B:2002 , HOH B:2187	BINDING SITE FOR RESIDUE PO4 B 2003

(no "SS Bond" information available for 1Y1P)

(no "Cis Peptide Bond" information available for 1Y1P)

(no "SAP(SNP)/Variant" information available for 1Y1P)

(no "PROSITE Motif" information available for 1Y1P)

(no "Exon" information available for 1Y1P)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:342
 aligned with ALD2_SPOSA | Q9UUN9 from UniProtKB/Swiss-Prot  Length:343

    Alignment length:342
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341  
           ALD2_SPOSA     2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
               SCOP domains d1y1pa1 A:2-343 Aldehyde reductase II                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh...eeeee..................eeee.........hhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhh..........ee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.eee..........hhhhhhhhhhhh...hhhhhh...eeeeehhhhhhhhhhhhhh......eeee..eeehhhhhhhhhhhhh.................ee.hhhhhhhhhhh......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y1p A   2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341

Chain B from PDB  Type:PROTEIN  Length:342
 aligned with ALD2_SPOSA | Q9UUN9 from UniProtKB/Swiss-Prot  Length:343

    Alignment length:342
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341  
           ALD2_SPOSA     2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
               SCOP domains d1y1pb_ B: Aldehyde reductase II                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------Epimerase-1y1pB01 B:15-221                                                                                                                                                                                     -------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------Epimerase-1y1pB02 B:15-221                                                                                                                                                                                     -------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ............eeeee...hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee................eeeeee..........hhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhh..........ee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.eee....hhhhhh.hhhhhhhhhhh...hhhhhh...eeeeehhhhhhhhhhhhhh......eeee..eeehhhhhhhhhhhhh.................ee.hhhhhhhhhhh......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y1p B   2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: Aldehyde reductase II (3)

Sporobolomyces salmonicolor [TaxId: 5005] (3)

1a	d1y1pa1	A:2-343
1b	d1y1pb_	B:

(no "CATH Domain" information available for 1Y1P)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: Epimerase (42)

Sporobolomyces salmonicolor (3)

1a	Epimerase-1y1pB01	B:15-221
1b	Epimerase-1y1pB02	B:15-221

Asymmetric Unit(hide GO term definitions)

Chain A,B (ALD2_SPOSA | Q9UUN9)

molecular function
	GO:0008106	alcohol dehydrogenase (NADP+) activity	Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0050662	coenzyme binding	Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Units
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	1y1p
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	1.1.1.2
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UniProtKB/Swiss-Prot
	ALD2_SPOSA \| Q9UUN9	:	1ujm 1zze

1ujm	ALDEHYDE REDUCTASE IN APO-FORM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 2)

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Pfam Domains (1, 2)

Gene Ontology (6, 6)

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