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1Y1P
Biol. Unit 1
Info
Asym.Unit (127 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
X-RAY STRUCTURE OF ALDEHYDE REDUCTASE WITH NADPH
Authors
:
S. Kamitori, K. Kita
Date
:
19 Nov 04 (Deposition) - 06 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rossmann Fold, Short Chain Dehydrogenase Reductase, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Kamitori, A. Iguchi, A. Ohtaki, M. Yamada, K. Kita
X-Ray Structures Of Nadph-Dependent Carbonyl Reductase From Sporobolomyces Salmonicolor Provide Insights Into Stereoselective Reductions Of Carbonyl Compounds
J. Mol. Biol. V. 352 551 2005
(for further references see the
PDB file header
)
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ADENOSINE MONOPHOSPHATE (AMPa)
2b: ADENOSINE MONOPHOSPHATE (AMPb)
3a: BETA-NICOTINAMIDE RIBOSE MONOPHOSP... (NMNa)
3b: BETA-NICOTINAMIDE RIBOSE MONOPHOSP... (NMNb)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
3
NMN
1
Ligand/Ion
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:324 , ARG A:328 , HOH A:1068 , HOH A:1107
BINDING SITE FOR RESIDUE SO4 A 801
2
AC3
SOFTWARE
HIS A:27 , GLU A:30 , GLN A:31 , PHE A:214 , HOH A:1099 , HOH A:1175 , HOH A:1253
BINDING SITE FOR RESIDUE ACT A 803
3
AC4
SOFTWARE
PHE A:23 , VAL A:24 , ILE A:91 , SER A:93 , THR A:131 , SER A:132 , SER A:133 , TYR A:177 , LYS A:181 , PRO A:206 , ASN A:207 , THR A:209 , SER A:222 , THR A:223 , AMP A:1002 , HOH A:1019 , HOH A:1129
BINDING SITE FOR RESIDUE NMN A 1001
4
AC5
SOFTWARE
GLY A:19 , ASN A:21 , GLY A:22 , PHE A:23 , ARG A:44 , MET A:72 , ALA A:92 , SER A:93 , VAL A:95 , SER A:222 , NMN A:1001 , PO4 A:1003 , HOH A:1031 , HOH A:1032 , HOH A:1063 , HOH A:1067 , HOH A:1084 , HOH A:1086 , HOH A:1129 , HOH A:1156 , HOH A:1179
BINDING SITE FOR RESIDUE AMP A 1002
5
AC6
SOFTWARE
ASN A:21 , ARG A:44 , LYS A:48 , AMP A:1002 , HOH A:1031 , HOH A:1152 , HOH A:1157 , HOH A:1341
BINDING SITE FOR RESIDUE PO4 A 1003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1y1pa1 (A:2-343)
1b: SCOP_d1y1pb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Aldehyde reductase II
(3)
Sporobolomyces salmonicolor [TaxId: 5005]
(3)
1a
d1y1pa1
A:2-343
1b
d1y1pb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Epimerase_1y1pB01 (B:15-221)
1b: PFAM_Epimerase_1y1pB02 (B:15-221)
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Organisms
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)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Epimerase
(42)
Sporobolomyces salmonicolor
(3)
1a
Epimerase-1y1pB01
B:15-221
1b
Epimerase-1y1pB02
B:15-221
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (127 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
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