1UJM - JenaLib

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Title :   CRYSTAL STRUCTURE OF ALDEHYDE REDUCTASE 2 FROM SPOROBOLOMYCES SALMONICOLOR AKU4429

Authors :   S. Kamitori, A. Iguchi, A. Ohtaki, K. Kita

Date :   06 Aug 03 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Nadph-Dependent Enzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Kamitori, A. Iguchi, A. Ohtaki, K. Kita
Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 At 2. 0 A Resolution
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ALDEHYDE REDUCTASE II
	Chains	:	A, B
	EC Number	:	1.1.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SPORIDIOBOLUS SALMONICOLOR
	Organism Taxid	:	5005
	Strain	:	AKU4429
	Synonym	:	ALDEHYDE REDUCTASE 2, ARII

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	10	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 11)

No.	Name	Count	Type	Full Name
1	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:27 , GLU A:30 , GLN A:31 , PHE A:214 , ALA A:250 , VAL A:251 , HOH A:1035 , HOH A:1151 , HOH A:1200	BINDING SITE FOR RESIDUE SO4 A 1001
02	AC2	SOFTWARE	ASN A:21 , ARG A:44 , LYS A:48 , HOH A:1250 , HOH A:1317	BINDING SITE FOR RESIDUE SO4 A 1002
03	AC3	SOFTWARE	ARG A:55 , HOH A:1326	BINDING SITE FOR RESIDUE SO4 A 1003
04	AC4	SOFTWARE	ARG A:324 , ARG A:328 , HOH A:1055 , HOH A:1324	BINDING SITE FOR RESIDUE SO4 A 1004
05	AC5	SOFTWARE	HIS B:27 , GLU B:30 , GLN B:31 , PHE B:214 , VAL B:251 , HOH B:1020 , HOH B:1137 , HOH B:1195 , HOH B:1232	BINDING SITE FOR RESIDUE SO4 B 1005
06	AC6	SOFTWARE	ASN B:21 , ARG B:44 , LYS B:48 , VAL B:95	BINDING SITE FOR RESIDUE SO4 B 1006
07	AC7	SOFTWARE	ARG B:55 , THR B:212 , PHE B:214	BINDING SITE FOR RESIDUE SO4 B 1007
08	AC8	SOFTWARE	ARG B:324 , ARG B:328 , HOH B:1034 , HOH B:1142 , HOH B:1284	BINDING SITE FOR RESIDUE SO4 B 1008
09	AC9	SOFTWARE	GLY B:22 , PHE B:23 , VAL B:24 , SER B:222 , HOH B:1055 , HOH B:1071	BINDING SITE FOR RESIDUE SO4 B 1009
10	BC1	SOFTWARE	LYS A:309 , HOH A:1039 , HOH A:1095 , THR B:312 , LEU B:316 , TRP B:327 , HOH B:1025 , HOH B:1193	BINDING SITE FOR RESIDUE SO4 B 1010

(no "SS Bond" information available for 1UJM)

(no "Cis Peptide Bond" information available for 1UJM)

(no "SAP(SNP)/Variant" information available for 1UJM)

(no "PROSITE Motif" information available for 1UJM)

(no "Exon" information available for 1UJM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:342
 aligned with ALD2_SPOSA | Q9UUN9 from UniProtKB/Swiss-Prot  Length:343

    Alignment length:342
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341  
           ALD2_SPOSA     2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
               SCOP domains d1ujma_ A: Aldehyde reductase II                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee...hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee..................eeee.........hhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhh..........ee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.eee....hhhhhh.hhhhhhhhhhh...hhhhhh...eeeeehhhhhhhhhhhhhh......eeee..eeehhhhhhhhhhhhh.................ee.hhhhhhhhhhh......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ujm A   2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDmLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFmDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWmmSLFNGEVSPALALmPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
                                    11        21        31        41        51        61        71|       81        91       101       111       121       131       141       151       161       171       181       191|      201       211       221     ||231       241|      251       261       271       281       291       301       311       321       331       341  
                                                                                                 72-MSE                                                                                                                 192-MSE                            227-MSE        242-MSE                                                                                                 
                                                                                                                                                                                                                                                            228-MSE

Chain B from PDB  Type:PROTEIN  Length:342
 aligned with ALD2_SPOSA | Q9UUN9 from UniProtKB/Swiss-Prot  Length:343

    Alignment length:342
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341  
           ALD2_SPOSA     2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
               SCOP domains d1ujmb_ B: Aldehyde reductase II                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------Epimerase-1ujmB01 B:15-221                                                                                                                                                                                     -------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------Epimerase-1ujmB02 B:15-221                                                                                                                                                                                     -------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ............eeeee...hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee..................eeee.........hhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhh..........ee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.eee....hhhhhh.hhhhhhhhhhh...hhhhhh...eeeeehhhhhhhhhhhhhh......eeee..eeehhhhhhhhhhhhh.................ee.hhhhhhhhhhh......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ujm B   2 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDmLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFmDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWmmSLFNGEVSPALALmPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 343
                                    11        21        31        41        51        61        71|       81        91       101       111       121       131       141       151       161       171       181       191|      201       211       221     ||231       241|      251       261       271       281       291       301       311       321       331       341  
                                                                                                 72-MSE                                                                                                                 192-MSE                            227-MSE        242-MSE                                                                                                 
                                                                                                                                                                                                                                                            228-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: Aldehyde reductase II (3)

Sporobolomyces salmonicolor [TaxId: 5005] (3)

1a	d1ujma_	A:
1b	d1ujmb_	B:

(no "CATH Domain" information available for 1UJM)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: Epimerase (42)

Sporobolomyces salmonicolor (3)

1a	Epimerase-1ujmB01	B:15-221
1b	Epimerase-1ujmB02	B:15-221

Asymmetric Unit(hide GO term definitions)

Chain A,B (ALD2_SPOSA | Q9UUN9)

molecular function
	GO:0008106	alcohol dehydrogenase (NADP+) activity	Catalysis of the reaction: an alcohol + NADP+ = an aldehyde + NADPH + H+.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0050662	coenzyme binding	Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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