1XK8 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   DIVALENT CATION TOLERANT PROTEIN CUTA FROM HOMO SAPIENS O60888

Authors :   W. Tempel, L. Chen, Z. -J. Liu, D. Lee, A. Shah, T. A. Dailey, M. R. Mayer, W. B. Arendall Iii, J. P. Rose, H. A. Dailey, J. S. Richardson, D. C. Richardson, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)

Date :   27 Sep 04 (Deposition) - 19 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Human, Homo Sapiens, Divalent Cation Tolerant Protein Cuta, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. Tempel, L. Chen, Z. -J. Liu, D. Lee, A. Shah, T. A. Dailey, M. R. Mayer, W. B. Arendall Iii, J. P. Rose, H. A. Dailey, J. S. Richardson, D. C. Richardson, B. -C. Wang
Divalent Cation Tolerant Protein Cuta From Homo Sapiens O60888
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - DIVALENT CATION TOLERANT PROTEIN CUTA
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 3)

No.	Name	Count	Type	Full Name
1	NA	3	Ligand/Ion	SODIUM ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:85 , GLY A:88 , GLU C:67 , GLU C:91 , ASP C:93	BINDING SITE FOR RESIDUE NA C 201
2	AC2	SOFTWARE	GLU A:131 , PRO F:42	BINDING SITE FOR RESIDUE NA A 202
3	AC3	SOFTWARE	PRO A:42 , GLU C:131 , PRO D:42 , GLU F:131	BINDING SITE FOR RESIDUE NA C 203

(no "SS Bond" information available for 1XK8)

(no "Cis Peptide Bond" information available for 1XK8)

(no "SAP(SNP)/Variant" information available for 1XK8)

(no "PROSITE Motif" information available for 1XK8)

(no "Exon" information available for 1XK8)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    72        82        92       102       112       122       132       142       152       162       
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
               SCOP domains d1xk8a_ A: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 1xk8A00 A:40-146  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1xk8 A  40 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 146
                                    49        59        69        79        89        99       109       119       129       139

Chain B from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    72        82        92       102       112       122       132       142       152       162       
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
               SCOP domains d1xk8b_ B: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 1xk8B00 B:40-146  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1xk8 B  40 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 146
                                    49        59        69        79        89        99       109       119       129       139

Chain C from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    72        82        92       102       112       122       132       142       152       162       
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
               SCOP domains d1xk8c_ C: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 1xk8C00 C:40-146  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1xk8 C  40 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 146
                                    49        59        69        79        89        99       109       119       129       139

Chain D from PDB  Type:PROTEIN  Length:108
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:108
                                    72        82        92       102       112       122       132       142       152       162        
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTES 170
               SCOP domains d1xk8d_ D: Mammalian CutA-like protein                                                                       SCOP domains
               CATH domains 1xk8D00 D:40-147  [code=3.30.70.830, no name defined]                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1xk8 D  40 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTES 147
                                    49        59        69        79        89        99       109       119       129       139

Chain E from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    72        82        92       102       112       122       132       142       152       162       
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
               SCOP domains d1xk8e_ E: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 1xk8E00 E:40-146  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1xk8 E  40 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 146
                                    49        59        69        79        89        99       109       119       129       139

Chain F from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    72        82        92       102       112       122       132       142       152       162       
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
               SCOP domains d1xk8f_ F: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 1xk8F00 F:40-146  [code=3.30.70.830, no name defined]                                                       CATH domains
           Pfam domains (1) -----CutA1-1xk8F01 F:45-146                                                                                 Pfam domains (1)
           Pfam domains (2) -----CutA1-1xk8F02 F:45-146                                                                                 Pfam domains (2)
           Pfam domains (3) -----CutA1-1xk8F03 F:45-146                                                                                 Pfam domains (3)
           Pfam domains (4) -----CutA1-1xk8F04 F:45-146                                                                                 Pfam domains (4)
           Pfam domains (5) -----CutA1-1xk8F05 F:45-146                                                                                 Pfam domains (5)
           Pfam domains (6) -----CutA1-1xk8F06 F:45-146                                                                                 Pfam domains (6)
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhh........eeeee..eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1xk8 F  40 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 146
                                    49        59        69        79        89        99       109       119       129       139

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: GlnB-like (79)

Family: Divalent ion tolerance proteins CutA (CutA1) (22)

Protein domain: Mammalian CutA-like protein (3)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d1xk8a_	A:
1b	d1xk8e_	E:
1c	d1xk8f_	F:
1d	d1xk8b_	B:
1e	d1xk8c_	C:
1f	d1xk8d_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.830, no name defined] (20)

Human (Homo sapiens) (2)

1a	1xk8A00	A:40-146
1b	1xk8F00	F:40-146
1c	1xk8D00	D:40-147
1d	1xk8B00	B:40-146
1e	1xk8C00	C:40-146
1f	1xk8E00	E:40-146

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GlnB-like (50)

Family: CutA1 (13)

Homo sapiens (Human) (2)

1a	CutA1-1xk8F01	F:45-146
1b	CutA1-1xk8F02	F:45-146
1c	CutA1-1xk8F03	F:45-146
1d	CutA1-1xk8F04	F:45-146
1e	CutA1-1xk8F05	F:45-146
1f	CutA1-1xk8F06	F:45-146

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (CUTA_HUMAN | O60888)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0008104	protein localization	Any process in which a protein is transported to, or maintained in, a specific location.
	GO:0010038	response to metal ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1xk8)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1xk8
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	CUTA_HUMAN \| O60888
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	CUTA_HUMAN \| O60888
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	CUTA_HUMAN \| O60888	:	2zfh

1osc	MOLECULAR REPLACEMENT SEARCH MODEL RELATED ID: O60888 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (7, 7)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File