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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE CUTA1 FROM HOMO SAPIENS AT 2.05A RESOLUTION
 
Authors :  B. Bagautdinov, K. Yutani, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  07 Jan 08  (Deposition) - 22 Jan 08  (Release) - 18 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Human Brain, Trimeric Structure, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Bagautdinov, Y. Matsuura, S. Bagautdinova, N. Kunishima, K. Yutan
Structure Of Putative Cuta1 From Homo Sapiens Determined At 2. 05 A Resolution.
Acta Crystallogr. , Sect. F V. 64 351 2008
PubMed-ID: 18453701  |  Reference-DOI: 10.1107/S1744309108009846

(-) Compounds

Molecule 1 - CUTA
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 11A
    Expression System Strain: (DE3)RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CUTA, ACHAP, C6ORF82
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BRAIN ACETYLCHOLINESTERASE PUTATIVE MEMBRANE ANCHOR, ACETYLCHOLINESTERASE-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2ZFH)

(-) Sites  (0, 0)

(no "Site" information available for 2ZFH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZFH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZFH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZFH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZFH)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZFH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:109
                                    70        80        90       100       110       120       130       140       150       160         
           CUTA_HUMAN    61 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
               SCOP domains d2zfha_ A: Mammalian CutA-like protein                                                                        SCOP domains
               CATH domains 2zfhA00 A:61-169  [code=3.30.70.830, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2zfh A  61 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
                                    70        80        90       100       110       120       130       140       150       160         


Chain B from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    71        81        91       101       111       121       131       141       151       161       
           CUTA_HUMAN    62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
               SCOP domains d2zfhb_ B: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 2zfhB00 B:62-168  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeee..eehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 2zfh B  62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
                                    71        81        91       101       111       121       131       141       151       161       


Chain C from PDB  Type:PROTEIN  Length:106
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:106
                                    72        82        92       102       112       122       132       142       152       162      
           CUTA_HUMAN    63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
               SCOP domains d2zfhc_ C: Mammalian CutA-like protein                                                                     SCOP domains
               CATH domains 2zfhC00 C:63-168  [code=3.30.70.830, no name defined]                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 2zfh C  63 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
                                    72        82        92       102       112       122       132       142       152       162      


Chain D from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    71        81        91       101       111       121       131       141       151       161       
           CUTA_HUMAN    62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
               SCOP domains d2zfhd_ D: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 2zfhD00 D:62-168  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 2zfh D  62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
                                    71        81        91       101       111       121       131       141       151       161       


Chain E from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    71        81        91       101       111       121       131       141       151       161       
           CUTA_HUMAN    62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
               SCOP domains d2zfhe_ E: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 2zfhE00 E:62-168  [code=3.30.70.830, no name defined]                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 2zfh E  62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
                                    71        81        91       101       111       121       131       141       151       161       


Chain F from PDB  Type:PROTEIN  Length:107
 aligned with CUTA_HUMAN | O60888 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:107
                                    71        81        91       101       111       121       131       141       151       161       
           CUTA_HUMAN    62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
               SCOP domains d2zfhf_ F: Mammalian CutA-like protein                                                                      SCOP domains
               CATH domains 2zfhF00 F:62-168  [code=3.30.70.830, no name defined]                                                       CATH domains
           Pfam domains (1) ------CutA1-2zfhF01 F:68-168                                                                                Pfam domains (1)
           Pfam domains (2) ------CutA1-2zfhF02 F:68-168                                                                                Pfam domains (2)
           Pfam domains (3) ------CutA1-2zfhF03 F:68-168                                                                                Pfam domains (3)
           Pfam domains (4) ------CutA1-2zfhF04 F:68-168                                                                                Pfam domains (4)
           Pfam domains (5) ------CutA1-2zfhF05 F:68-168                                                                                Pfam domains (5)
           Pfam domains (6) ------CutA1-2zfhF06 F:68-168                                                                                Pfam domains (6)
         Sec.struct. author ......eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 2zfh F  62 GYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
                                    71        81        91       101       111       121       131       141       151       161
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: GlnB-like (50)
(-)
Family: CutA1 (13)
(-)
Homo sapiens (Human) (2)
1aCutA1-2zfhF01F:68-168
1bCutA1-2zfhF02F:68-168
1cCutA1-2zfhF03F:68-168
1dCutA1-2zfhF04F:68-168
1eCutA1-2zfhF05F:68-168
1fCutA1-2zfhF06F:68-168

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CUTA_HUMAN | O60888)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0008104    protein localization    Any process in which a protein is transported to, or maintained in, a specific location.
    GO:0010038    response to metal ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  2zfh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CUTA_HUMAN | O60888: 1xk8

(-) Related Entries Specified in the PDB File

1xk8 THE SAME PROTEIN OF 2.7 A RESOLUTION