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Title :   CRYSTAL STRUCTURE OF RAT CUTA1 AT 2.15 A RESOLUTION

Authors :   F. Arnesano, L. Banci, M. Benvenuti, I. Bertini, V. Calderone, S. Mangani, M. S. Viezzoli, Structural Proteomics In Europe (Spine)

Date :   19 Mar 03 (Deposition) - 25 Nov 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: A,B,C,D,E,F  (1x)

Keywords :   Cuta, Copper Resistance, Structural Proteomics In Europe, Spine, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Arnesano, L. Banci, M. Benvenuti, I. Bertini, V. Calderone, S. Mangani, M. S. Viezzoli
The Evolutionarily Conserved Trimeric Structure Of Cuta1 Proteins Suggests A Role In Signal Transduction
J. Biol. Chem. V. 278 45999 2003
PubMed-ID: 12949080 | Reference-DOI: 10.1074/JBC.M304398200
(for further references see the PDB file header)

Molecule 1 - SIMILAR TO DIVALENT CATION TOLERANT PROTEIN CUTA
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RESIDUE 44-169
	Gene	:	CUTA, CUTA1
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (1x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1OSC)

(no "Site" information available for 1OSC)

(no "SS Bond" information available for 1OSC)

Asymmetric Unit

No.	Residues
1	Ser F:113	-	Val F:114

(no "SAP(SNP)/Variant" information available for 1OSC)

(no "PROSITE Motif" information available for 1OSC)

(no "Exon" information available for 1OSC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:108
 aligned with CUTA_RAT | Q6MGD0 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:108
                                    70        80        90       100       110       120       130       140       150       160        
             CUTA_RAT    61 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTES 168
               SCOP domains d1osca_ A: Mammalian CutA-like protein                                                                       SCOP domains
               CATH domains 1oscA00 A:6-113  [code=3.30.70.830, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhh........eeeeee.eehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1osc A   6 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTES 113
                                    15        25        35        45        55        65        75        85        95       105

Chain B from PDB  Type:PROTEIN  Length:109
 aligned with CUTA_RAT | Q6MGD0 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:109
                                    70        80        90       100       110       120       130       140       150       160         
             CUTA_RAT    61 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTESV 169
               SCOP domains d1oscb_ B: Mammalian CutA-like protein                                                                        SCOP domains
               CATH domains 1oscB00 B:6-114  [code=3.30.70.830, no name defined]                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1osc B   6 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTESV 114
                                    15        25        35        45        55        65        75        85        95       105

Chain C from PDB  Type:PROTEIN  Length:108
 aligned with CUTA_RAT | Q6MGD0 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:108
                                    70        80        90       100       110       120       130       140       150       160        
             CUTA_RAT    61 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTES 168
               SCOP domains d1oscc_ C: Mammalian CutA-like protein                                                                       SCOP domains
               CATH domains 1oscC00 C:6-113  [code=3.30.70.830, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh......eeeeee.eehhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1osc C   6 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTES 113
                                    15        25        35        45        55        65        75        85        95       105

Chain D from PDB  Type:PROTEIN  Length:109
 aligned with CUTA_RAT | Q6MGD0 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:109
                                    68        78        88        98       108       118       128       138       148       158         
             CUTA_RAT    59 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTE 167
               SCOP domains d1oscd_ D: Mammalian CutA-like protein                                                                        SCOP domains
               CATH domains 1oscD00 D:4-112  [code=3.30.70.830, no name defined]                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhh........eeeeee.eehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1osc D   4 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTE 112
                                    13        23        33        43        53        63        73        83        93       103

Chain E from PDB  Type:PROTEIN  Length:110
 aligned with CUTA_RAT | Q6MGD0 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:112
                                    67        77        87        97       107       117       127       137       147       157       167  
             CUTA_RAT    58 GSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTESV 169
               SCOP domains d1osce_ E: Mammalian CutA-like protein                                                                           SCOP domains
               CATH domains 1oscE00 E:3-114  [code=3.30.70.830, no name defined]                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh.--...eeeee..eehhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1osc E   3 GSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHP--VAEVIALPVEQGNPPYLHWVHQVTESV 114
                                    12        22        32        42        52        62        72        82  |  |  92       102       112  
                                                                                                             85 88

Chain F from PDB  Type:PROTEIN  Length:111
 aligned with CUTA_RAT | Q6MGD0 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:112
                                    67        77        87        97       107       117       127       137       147       157       167  
             CUTA_RAT    58 GSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTESV 169
               SCOP domains d1oscf_ F: Mammalian CutA-like protein                                                                           SCOP domains
               CATH domains 1oscF00 F:3-114  [code=3.30.70.830, no name defined]                                                             CATH domains
           Pfam domains (1) --------CutA1-1oscF01 F:11-112                                                                                -- Pfam domains (1)
           Pfam domains (2) --------CutA1-1oscF02 F:11-112                                                                                -- Pfam domains (2)
           Pfam domains (3) --------CutA1-1oscF03 F:11-112                                                                                -- Pfam domains (3)
           Pfam domains (4) --------CutA1-1oscF04 F:11-112                                                                                -- Pfam domains (4)
           Pfam domains (5) --------CutA1-1oscF05 F:11-112                                                                                -- Pfam domains (5)
           Pfam domains (6) --------CutA1-1oscF06 F:11-112                                                                                -- Pfam domains (6)
         Sec.struct. author ........eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeeee..hhhhhhhhhhhhh..-...eeeeee.eehhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1osc F   3 GSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPY-VAEVIALPVEQGNPPYLHWVHQVTESV 114
                                    12        22        32        42        52        62        72        82   | |  92       102       112  
                                                                                                              86 |                          
                                                                                                                88

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: GlnB-like (79)

Family: Divalent ion tolerance proteins CutA (CutA1) (22)

Protein domain: Mammalian CutA-like protein (3)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

1a	d1osca_	A:
1b	d1oscb_	B:
1c	d1oscc_	C:
1d	d1oscd_	D:
1e	d1osce_	E:
1f	d1oscf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.830, no name defined] (20)

Norway rat (Rattus norvegicus) (1)

1a	1oscA00	A:6-113
1b	1oscC00	C:6-113
1c	1oscB00	B:6-114
1d	1oscD00	D:4-112
1e	1oscE00	E:3-114
1f	1oscF00	F:3-114

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GlnB-like (50)

Family: CutA1 (13)

Rattus norvegicus (Rat) (1)

1a	CutA1-1oscF01	F:11-112
1b	CutA1-1oscF02	F:11-112
1c	CutA1-1oscF03	F:11-112
1d	CutA1-1oscF04	F:11-112
1e	CutA1-1oscF05	F:11-112
1f	CutA1-1oscF06	F:11-112

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (CUTA_RAT | Q6MGD0)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
biological process
	GO:0051260	protein homooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0008104	protein localization	Any process in which a protein is transported to, or maintained in, a specific location.
	GO:0010038	response to metal ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Sites
(no "Sites" information available for 1osc)

	Cis Peptide Bonds
		Ser F:113 - Val F:114	[ RasMol ]

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1kr4	STRUCTURE OF PROTEIN TM1056, CUTA
1naq	CRYSTAL STRUCTURE OF CUTA1 FROM E.COLI AT 1.7 A RESOLUTION RELATED ID: CIRMMP04 RELATED DB: TARGETDB

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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