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(-) Description

Title :  SEMET DERIVATIVE OF BBCRASP-1 FROM BORRELIA BURGDORFERI
 
Authors :  F. S. Cordes, P. Roversi, L. Goodstadt, C. Ponting, P. Kraiczy, C. Skerka, M. Kirschfink, M. M. Simon, V. Brade, P. Zipfel, R. Wallich, S. M. Lea
Date :  21 Jul 04  (Deposition) - 09 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complement Regulator, Complement Regulator Acquiring Surface Protein, Lyme Borreliosis, Factor H Binding, Tick, Selenomethionine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. S. Cordes, P. Roversi, P. Kraiczy, M. M. Simon, V. Brade, O. Jahraus, R. Wallis, C. Skerka, P. Zipfel, R. Wallich, S. M. Lea
A Novel Fold For The Factor H-Binding Protein Bbcrasp-1 Of Borrelia Burgdorferi
Nat. Struct. Mol. Biol. V. 12 276 2005
PubMed-ID: 15711564  |  Reference-DOI: 10.1038/NSMB902
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BBCRASP-1
    Atcc: 35210
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-2T
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Fragment: EXTRACELLULAR DOMAIN, RESIDUES 70-250
    Organism Common: LYME DISEASE SPIROCHETE
    Organism Scientific: BORRELIA BURGDORFERI
    Organism Taxid: 445985
    Other Details: FACTOR H BINDING DIMER SELENOMETHIONINE DERIVATIVE
    Other Details - Source: TICK ISOLATE GERMANY
    Strain: ZS7
    Variant: TICK ISOLATE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1W3Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W3Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1W3Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W3Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1W3Z)

(-) Exons   (0, 0)

(no "Exon" information available for 1W3Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:181
 aligned with O50957_BORBU | O50957 from UniProtKB/TrEMBL  Length:251

    Alignment length:181
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249 
         O50957_BORBU    70 ETIASELKAIGKELEDQKKEENIQIAKIAKEKFDFLSTFKVGPYDLIDEDIQMKIKRTLYSSLDYKKENIEKLKEILEILKKNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQEESKSLLMQIKSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTLKPAF 250
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1w3zA00 A:70-250 Bbcrasp-1                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w3z A  70 ETIASELKAIGKELEDQKKEENIQIAKIAKEKFDFLSTFKVGPYDLIDEDIQmKIKRTLYSSLDYKKENIEKLKEILEILKKNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQEESKSLLmQIKSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTLKPAF 250
                                    79        89        99       109       119  |    129       139       149       159       169       179       189       199       209       219       229       239       249 
                                                                              122-MSE                                                                     198-MSE                                                


Chain B from PDB  Type:PROTEIN  Length:180
 aligned with O50957_BORBU | O50957 from UniProtKB/TrEMBL  Length:251

    Alignment length:180
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249
         O50957_BORBU    70 ETIASELKAIGKELEDQKKEENIQIAKIAKEKFDFLSTFKVGPYDLIDEDIQMKIKRTLYSSLDYKKENIEKLKEILEILKKNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQEESKSLLMQIKSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTLKPA 249
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 1w3zB00 B:70-249 Bbcrasp-1                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1w3z B  70 ETIASELKAIGKELEDQKKEENIQIAKIAKEKFDFLSTFKVGPYDLIDEDIQmKIKRTLYSSLDYKKENIEKLKEILEILKKNSEHYNIIGRLIYHISWGIQFQIEQNLELIQNGVENLSQEESKSLLmQIKSNLEIKQRLKKTLNETLKVYNQNTQDNEKILAEHFNKYYKDFDTLKPA 249
                                    79        89        99       109       119  |    129       139       149       159       169       179       189       199       209       219       229       239       249
                                                                              122-MSE                                                                     198-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1W3Z)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1W3Z)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O50957_BORBU | O50957: 4bl4
UniProtKB/TrEMBL
        O50957_BORBU | O50957: 1w33 5a2u

(-) Related Entries Specified in the PDB File

1w33 BBCRASP-1 FROM BORRELIA BURGDORFERI