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(-) Description

Title :  CRYSTAL STRUCTURE OF A YBJQ-LIKE PROTEIN OF UNKNOWN FUNCTION (SSO2532) FROM SULFOLOBUS SOLFATARICUS P2 AT 1.76 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  03 Nov 04  (Deposition) - 16 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Ybjq-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (13815834) From Sulfolobus Solfataricus At 1. 76 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN SSO2532
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid273057
    StrainP2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABC   
Biological Unit 2 (1x)   DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3K4Ligand/IonPOTASSIUM ION
4PO411Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3K-1Ligand/IonPOTASSIUM ION
4PO45Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3K-1Ligand/IonPOTASSIUM ION
4PO46Ligand/IonPHOSPHATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:79 , ASP A:83 , ASN A:85 , HIS A:89 , HOH A:177BINDING SITE FOR RESIDUE K A 138
02AC2SOFTWAREHIS A:45 , SER A:46 , THR A:47 , ARG A:125 , ARG A:128 , TRP B:113 , HOH B:160BINDING SITE FOR RESIDUE PO4 A 139
03AC3SOFTWAREARG A:125 , SER A:126 , GLU A:127BINDING SITE FOR RESIDUE PO4 A 140
04AC4SOFTWAREHIS B:45 , SER B:46 , THR B:47 , ARG B:125 , ARG B:128 , HOH B:139 , HOH B:164 , HOH B:177BINDING SITE FOR RESIDUE PO4 B 138
05AC5SOFTWAREHOH A:181 , HIS C:79 , ASP C:83 , ASN C:85 , HIS C:89BINDING SITE FOR RESIDUE K C 138
06AC6SOFTWAREHIS C:45 , SER C:46 , THR C:47 , ARG C:125 , ARG C:128 , HOH C:146BINDING SITE FOR RESIDUE PO4 C 139
07AC7SOFTWAREHIS C:-3 , HIS C:-4 , HIS C:-2BINDING SITE FOR RESIDUE PO4 C 140
08AC8SOFTWAREHIS D:79 , ASP D:83 , ASN D:85 , HIS D:89 , HOH D:190BINDING SITE FOR RESIDUE K D 138
09AC9SOFTWAREHIS D:45 , SER D:46 , THR D:47 , ARG D:125 , ARG D:128 , HOH D:146 , TRP E:113BINDING SITE FOR RESIDUE PO4 D 139
10BC1SOFTWAREHIS D:0 , MET D:1 , HIS E:0 , MET E:1 , HIS F:0 , MET F:1BINDING SITE FOR RESIDUE PO4 D 140
11BC2SOFTWAREARG D:125 , SER D:126 , GLU D:127BINDING SITE FOR RESIDUE PO4 D 141
12BC3SOFTWAREHIS E:45 , SER E:46 , THR E:47 , ARG E:125 , ARG E:128 , HOH E:140 , HOH F:164BINDING SITE FOR RESIDUE PO4 E 138
13BC4SOFTWAREHIS F:79 , ASP F:83 , ASN F:85 , HIS F:89BINDING SITE FOR RESIDUE K F 138
14BC5SOFTWARETRP D:113 , HIS F:45 , SER F:46 , THR F:47 , ARG F:125 , ARG F:128 , HOH F:166BINDING SITE FOR RESIDUE PO4 F 139
15BC6SOFTWAREHIS F:-4 , HIS F:-3 , HIS F:-2 , HIS F:0BINDING SITE FOR RESIDUE PO4 F 140
16BC7SOFTWAREARG A:75 , ARG D:75 , SER D:76 , TRP D:77 , HOH E:139BINDING SITE FOR RESIDUE EDO D 142

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VPH)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:123 -Pro A:124
2Gly B:123 -Pro B:124
3Gly C:123 -Pro C:124
4Gly D:123 -Pro D:124
5Gly E:123 -Pro E:124
6Gly F:123 -Pro F:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VPH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VPH)

(-) Exons   (0, 0)

(no "Exon" information available for 1VPH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:138
 aligned with Q97VS8_SULSO | Q97VS8 from UniProtKB/TrEMBL  Length:137

    Alignment length:138
                             1                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129        
         Q97VS8_SULSO     - -MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
               SCOP domains d1vpha_ A: Hypothetical protein SSO2532                                                                                                    SCOP domains
               CATH domains 1vphA00 A:0-137 Hypothetical protein                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee....eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vph A   0 HMKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
                                     9        19        29        39        49        59        69        79        89        99       109       119       129        

Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q97VS8_SULSO | Q97VS8 from UniProtKB/TrEMBL  Length:137

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
         Q97VS8_SULSO     1 MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
               SCOP domains d1vphb_ B: Hypothetical protein SSO2532                                                                                                   SCOP domains
               CATH domains 1vphB00 B:1-137 Hypothetical protein                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee....eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vph B   1 MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       

Chain C from PDB  Type:PROTEIN  Length:144
 aligned with Q97VS8_SULSO | Q97VS8 from UniProtKB/TrEMBL  Length:137

    Alignment length:144
                                   1                                                                                                                                        
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133    
         Q97VS8_SULSO     - -------MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
               SCOP domains d1vphc_ C: Hypothetical protein SSO2532                                                                                                          SCOP domains
               CATH domains 1vphC00 C:-6-137 Hypothetical protein                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeeeeeee....eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vph C  -6 IHHHHHHMKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133    

Chain D from PDB  Type:PROTEIN  Length:138
 aligned with Q97VS8_SULSO | Q97VS8 from UniProtKB/TrEMBL  Length:137

    Alignment length:138
                             1                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129        
         Q97VS8_SULSO     - -MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
               SCOP domains d1vphd_ D: Hypothetical protein SSO2532                                                                                                    SCOP domains
               CATH domains 1vphD00 D:0-137 Hypothetical protein                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee....eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vph D   0 HMKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
                                     9        19        29        39        49        59        69        79        89        99       109       119       129        

Chain E from PDB  Type:PROTEIN  Length:138
 aligned with Q97VS8_SULSO | Q97VS8 from UniProtKB/TrEMBL  Length:137

    Alignment length:138
                             1                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129        
         Q97VS8_SULSO     - -MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
               SCOP domains d1vphe_ E: Hypothetical protein SSO2532                                                                                                    SCOP domains
               CATH domains 1vphE00 E:0-137 Hypothetical protein                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee....eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vph E   0 HMKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
                                     9        19        29        39        49        59        69        79        89        99       109       119       129        

Chain F from PDB  Type:PROTEIN  Length:143
 aligned with Q97VS8_SULSO | Q97VS8 from UniProtKB/TrEMBL  Length:137

    Alignment length:143
                                  1                                                                                                                                        
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134   
         Q97VS8_SULSO     - ------MKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
               SCOP domains d1vphf_ F: Hypothetical protein SSO2532                                                                                                         SCOP domains
               CATH domains 1vphF00 F:-5-137 Hypothetical protein                                                                                                           CATH domains
           Pfam domains (1) ------------------------UPF0047-1vphF01 F:19-135                                                                                             -- Pfam domains (1)
           Pfam domains (2) ------------------------UPF0047-1vphF02 F:19-135                                                                                             -- Pfam domains (2)
           Pfam domains (3) ------------------------UPF0047-1vphF03 F:19-135                                                                                             -- Pfam domains (3)
           Pfam domains (4) ------------------------UPF0047-1vphF04 F:19-135                                                                                             -- Pfam domains (4)
           Pfam domains (5) ------------------------UPF0047-1vphF05 F:19-135                                                                                             -- Pfam domains (5)
           Pfam domains (6) ------------------------UPF0047-1vphF06 F:19-135                                                                                             -- Pfam domains (6)
         Sec.struct. author .......eeeeeeeeeee....eeeehhhhhhhhhhhhh..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vph F  -5 HHHHHHMKVYFDDIYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILGE 137
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (0, 0)

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