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1VPH
Asym. Unit
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Asym.Unit (152 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A YBJQ-LIKE PROTEIN OF UNKNOWN FUNCTION (SSO2532) FROM SULFOLOBUS SOLFATARICUS P2 AT 1.76 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
03 Nov 04 (Deposition) - 16 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Ybjq-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (13815834) From Sulfolobus Solfataricus At 1. 76 A Resolution
To Be Published
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
4i: PHOSPHATE ION (PO4i)
4j: PHOSPHATE ION (PO4j)
4k: PHOSPHATE ION (PO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
K
4
Ligand/Ion
POTASSIUM ION
4
PO4
11
Ligand/Ion
PHOSPHATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:79 , ASP A:83 , ASN A:85 , HIS A:89 , HOH A:177
BINDING SITE FOR RESIDUE K A 138
02
AC2
SOFTWARE
HIS A:45 , SER A:46 , THR A:47 , ARG A:125 , ARG A:128 , TRP B:113 , HOH B:160
BINDING SITE FOR RESIDUE PO4 A 139
03
AC3
SOFTWARE
ARG A:125 , SER A:126 , GLU A:127
BINDING SITE FOR RESIDUE PO4 A 140
04
AC4
SOFTWARE
HIS B:45 , SER B:46 , THR B:47 , ARG B:125 , ARG B:128 , HOH B:139 , HOH B:164 , HOH B:177
BINDING SITE FOR RESIDUE PO4 B 138
05
AC5
SOFTWARE
HOH A:181 , HIS C:79 , ASP C:83 , ASN C:85 , HIS C:89
BINDING SITE FOR RESIDUE K C 138
06
AC6
SOFTWARE
HIS C:45 , SER C:46 , THR C:47 , ARG C:125 , ARG C:128 , HOH C:146
BINDING SITE FOR RESIDUE PO4 C 139
07
AC7
SOFTWARE
HIS C:-3 , HIS C:-4 , HIS C:-2
BINDING SITE FOR RESIDUE PO4 C 140
08
AC8
SOFTWARE
HIS D:79 , ASP D:83 , ASN D:85 , HIS D:89 , HOH D:190
BINDING SITE FOR RESIDUE K D 138
09
AC9
SOFTWARE
HIS D:45 , SER D:46 , THR D:47 , ARG D:125 , ARG D:128 , HOH D:146 , TRP E:113
BINDING SITE FOR RESIDUE PO4 D 139
10
BC1
SOFTWARE
HIS D:0 , MET D:1 , HIS E:0 , MET E:1 , HIS F:0 , MET F:1
BINDING SITE FOR RESIDUE PO4 D 140
11
BC2
SOFTWARE
ARG D:125 , SER D:126 , GLU D:127
BINDING SITE FOR RESIDUE PO4 D 141
12
BC3
SOFTWARE
HIS E:45 , SER E:46 , THR E:47 , ARG E:125 , ARG E:128 , HOH E:140 , HOH F:164
BINDING SITE FOR RESIDUE PO4 E 138
13
BC4
SOFTWARE
HIS F:79 , ASP F:83 , ASN F:85 , HIS F:89
BINDING SITE FOR RESIDUE K F 138
14
BC5
SOFTWARE
TRP D:113 , HIS F:45 , SER F:46 , THR F:47 , ARG F:125 , ARG F:128 , HOH F:166
BINDING SITE FOR RESIDUE PO4 F 139
15
BC6
SOFTWARE
HIS F:-4 , HIS F:-3 , HIS F:-2 , HIS F:0
BINDING SITE FOR RESIDUE PO4 F 140
16
BC7
SOFTWARE
ARG A:75 , ARG D:75 , SER D:76 , TRP D:77 , HOH E:139
BINDING SITE FOR RESIDUE EDO D 142
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1vpha_ (A:)
1b: SCOP_d1vphb_ (B:)
1c: SCOP_d1vphc_ (C:)
1d: SCOP_d1vphd_ (D:)
1e: SCOP_d1vphe_ (E:)
1f: SCOP_d1vphf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
YjbQ-like
(9)
Superfamily
:
YjbQ-like
(9)
Family
:
YjbQ-like
(6)
Protein domain
:
Hypothetical protein SSO2532
(1)
Sulfolobus solfataricus [TaxId: 2287]
(1)
1a
d1vpha_
A:
1b
d1vphb_
B:
1c
d1vphc_
C:
1d
d1vphd_
D:
1e
d1vphe_
E:
1f
d1vphf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1vphB00 (B:1-137)
1b: CATH_1vphA00 (A:0-137)
1c: CATH_1vphD00 (D:0-137)
1d: CATH_1vphE00 (E:0-137)
1e: CATH_1vphF00 (F:-5-137)
1f: CATH_1vphC00 (C:-6-137)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Hypothetical protein
(8)
Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2.
(1)
1a
1vphB00
B:1-137
1b
1vphA00
A:0-137
1c
1vphD00
D:0-137
1d
1vphE00
E:0-137
1e
1vphF00
F:-5-137
1f
1vphC00
C:-6-137
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_UPF0047_1vphF01 (F:19-135)
1b: PFAM_UPF0047_1vphF02 (F:19-135)
1c: PFAM_UPF0047_1vphF03 (F:19-135)
1d: PFAM_UPF0047_1vphF04 (F:19-135)
1e: PFAM_UPF0047_1vphF05 (F:19-135)
1f: PFAM_UPF0047_1vphF06 (F:19-135)
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Clan
:
no clan defined [family: UPF0047]
(8)
Family
:
UPF0047
(8)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(1)
1a
UPF0047-1vphF01
F:19-135
1b
UPF0047-1vphF02
F:19-135
1c
UPF0047-1vphF03
F:19-135
1d
UPF0047-1vphF04
F:19-135
1e
UPF0047-1vphF05
F:19-135
1f
UPF0047-1vphF06
F:19-135
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