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(-) Description

Title :  MONA/GADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
 
Authors :  M. Lewitzky, M. Harkiolaki, M. C. Domart, S. M. Feller
Date :  09 Dec 03  (Deposition) - 06 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,D
Keywords :  Signaling Protein Regulator, Sh3 Domain/Complex, Adaptor Protein (Mona), Protein Serine/Threonine Kinase (Hpk1), Antigen Receptor Signalling Mediator (Both), Sh3 Domain, Ppii Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Lewitzky, M. Harkiolaki, M. C. Domart, E. Jones, S. M. Feller
Mona/Gads Sh3C Binding To Hematopoietic Progenitor Kinase 1 (Hpk1) Combines An Atypical Sh3 Binding Motif, R/Kxxk, With A Classical Pxxp Motif Embedded In A Polyproline Type Ii (Ppii) Helix
J. Biol. Chem. V. 279 28724 2004
PubMed-ID: 15100220  |  Reference-DOI: 10.1074/JBC.M402745200

(-) Compounds

Molecule 1 - GRB2-RELATED ADAPTOR PROTEIN 2
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-6P-1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    FragmentSH3C DOMAIN, RESIDUES 265-322
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymGADS PROTEIN, GROWTH FACTOR RECEPTOR BINDING PROTEIN, GRB-2-LIKE PROTEIN, GRB2L, HEMATOPOIETIC CELL-ASSOCIATED ADAPTOR PROTEIN GRPL, GRB-2-RELATED MONOCYTIC ADAPTER PROTEIN, MONOCYTIC ADAPTER, MONA, ADAPTER PROTEIN GRID
 
Molecule 2 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 1
    ChainsD
    EC Number2.7.1.37
    FragmentSH3 BINDING PEPTIDE, RESIDUES 465-480
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymHEMATOPOETIC PRGENITOR KINASE I, MAPK/ERK KINASE KINASE KINASE 1, MEK KINASE KINASE 1, MEKKK 1, HPK
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1UTI)

(-) Sites  (0, 0)

(no "Site" information available for 1UTI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UTI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UTI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UTI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UTI)

(-) Exons   (0, 0)

(no "Exon" information available for 1UTI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:57
 aligned with GRAP2_MOUSE | O89100 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:57
                                   274       284       294       304       314       
          GRAP2_MOUSE   265 VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM 321
               SCOP domains d1utia_ A: Grb2-related adaptor protein 2 (Mona/Gads)     SCOP domains
               CATH domains 1utiA00 A:1-57 SH3 Domains                                CATH domains
               Pfam domains ----SH3_1-1utiA01 A:5-50                          ------- Pfam domains
         Sec.struct. author ..eeee..................eeeeee.....eeeeee..eeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 1uti A   1 VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM  57
                                    10        20        30        40        50       

Chain D from PDB  Type:PROTEIN  Length:16
 aligned with M4K1_MOUSE | P70218 from UniProtKB/Swiss-Prot  Length:827

    Alignment length:16
                                   474      
           M4K1_MOUSE   465 GQPPLVPPRKEKMRGK 480
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 1uti D   1 GQPPLVPPRKEKMRGK  16
                                    10      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: SH3 (175)

(-) Gene Ontology  (24, 26)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GRAP2_MOUSE | O89100)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D   (M4K1_MOUSE | P70218)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008349    MAP kinase kinase kinase kinase activity    Catalysis of the phosphorylation of serine and threonine residues in a mitogen-activated protein kinase kinase kinase (MAPKKK), resulting in activation of MAPKKK. MAPKKK signaling pathways relay, amplify and integrate signals from the plasma membrane to the nucleus in response to a diverse range of extracellular stimuli.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0004702    signal transducer, downstream of receptor, with serine/threonine kinase activity    Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0000185    activation of MAPKKK activity    Any process that initiates the activity of the inactive enzyme MAP kinase kinase kinase (MAPKKK).
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0018105    peptidyl-serine phosphorylation    The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRAP2_MOUSE | O891001h3h 1oeb 1r1p 1r1q 1r1s 2d0n 2w10

(-) Related Entries Specified in the PDB File

1h3h STRUCTURAL BASIS FOR SPECIFIC RECOGNITION OF AN RXXK-CONTAINING SLP-76 PEPTIDE BY THE GADS C-TERMINAL SH3 DOMAIN
1oeb MONA/GADS SH3C DOMAIN