1OEB - JenaLib

Title :   MONA/GADS SH3C DOMAIN

Authors :   M. Harkiolaki, M. Lewitzky, R. J. C. Gilbert, E. Y. Jones, R. P. Bourette, G. Mouchiroud, H. Sondermann, I. Moarefi, S. M. Feller

Date :   24 Mar 03 (Deposition) - 02 Apr 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.76

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Protein Binding, Sh3 Domain/Complex, Sh3, Slp-76, Dimer, Mona, Gads, Signal Tranduction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Harkiolaki, M. Lewitzky, R. J. C. Gilbert, E. Y. Jones, R. P. Bourette, G. Mouchiroud, H. Sondermann, I. Moarefi, S. M. Feller
Structural Basis For Sh3 Domain-Mediated High-Affinity Binding Between Mona/Gads And Slp-76
Embo J. V. 22 2571 2003
PubMed-ID: 12773374 | Reference-DOI: 10.1093/EMBOJ/CDG258

Compounds

Molecule 1 - GRB2-RELATED ADAPTOR PROTEIN 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	SH3C DOMAIN, RESIDUES 265-322
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	THROMBIN CLEAVAGE OVERHANG BETWEEN A-4 AND A-1
	Synonym	:	GADS PROTEIN, GROWTH FACTOR RECEPTOR PROTEIN, GRBLG, GRF40 ADAPTOR PROTEIN, GRF-40, GRB-2-LIKE PROTEIN, GRB2L, GRBX, P38, HEMATOPOIETIC CELL-ASSOCIATED ADAPTOR PROTEIN GRPL, ADAPTER PROTEIN GRID, SH3-SH2-SH3 ADAPTOR MONA

Molecule 2 - LYMPHOCYTE CYTOSOLIC PROTEIN 2
	Chains	:	C, D
	Fragment	:	PROTEIN INTERACTION PEPTIDE, RESIDUES 231-243
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	SH2 DOMAIN-CONTAINING LEUCOCYTE PROTEIN OF 76 KDA, SLP-76 TYROSINE PHOSPHOPROTEIN, SLP76
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:59
 aligned with GRAP2_MOUSE | O89100 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:130
                                   199       209       219       229       239       249       259       269       279       289       299       309       319
          GRAP2_MOUSE   190 PLGPQQFHPHQQPSPQFTPGPQPPQQQRYLQHFHQDRRGGSLDINDGHCGLGSEVNATLMHRRHTDPVQLQAAGRVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 319
               SCOP domains d1o                                                                       eba_ A: Grb2-related adaptor protein 2 (Mona/Gads)       SCOP domains
               CATH domains 1oe                                                                       bA00 A:-4-55 SH3 Domains                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-----------------------------------------------------------------------...eeee..................eeeeee.....eeeeee..eeeeee...ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------SH3  PDB: A:1-55 UniProt: 263-322                         PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oeb A  -4 PLG-----------------------------------------------------------------------SVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP  55
                              |      -         -         -         -         -         -         -    ||   5        15        25        35        45        55
                             -2                                                                      -1|                                                      
                                                                                                       1

Chain B from PDB  Type:PROTEIN  Length:55
 aligned with GRAP2_MOUSE | O89100 from UniProtKB/Swiss-Prot  Length:322

    Alignment length:55
                                   276       286       296       306       316     
          GRAP2_MOUSE   267 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM 321
               SCOP domains d1oebb_ B: Grb2-related adaptor protein 2 (Mona/Gads)   SCOP domains
               CATH domains 1oebB00 B:3-57 SH3 Domains                              CATH domains
           Pfam domains (1) --SH3_1-1oebB01 B:5-50                          ------- Pfam domains (1)
           Pfam domains (2) --SH3_1-1oebB02 B:5-50                          ------- Pfam domains (2)
         Sec.struct. author .eee..................eeeeee.....eeeeee..eeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE SH3  PDB: - UniProt: 263-322                            PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 1oeb B   3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM  57
                                    12        22        32        42        52

Chain C from PDB  Type:PROTEIN  Length:12
 aligned with LCP2_MOUSE | Q60787 from UniProtKB/Swiss-Prot  Length:533

    Alignment length:12
                                   241  
           LCP2_MOUSE   232 APSIDRSTKPPL 243
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ....hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 1oeb C   2 APSIDRSTKPPL  13
                                    11

Chain D from PDB  Type:PROTEIN  Length:12
 aligned with LCP2_MOUSE | Q60787 from UniProtKB/Swiss-Prot  Length:533

    Alignment length:12
                                   241  
           LCP2_MOUSE   232 APSIDRSTKPPL 243
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ....hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 1oeb D   2 APSIDRSTKPPL  13
                                    11

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (16, 18)

Asymmetric Unit(hide GO term definitions)

Chain A,B (GRAP2_MOUSE | O89100)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D (LCP2_MOUSE | Q60787)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0050852	T cell receptor signaling pathway	A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
	GO:0050663	cytokine secretion	The regulated release of cytokines from a cell. Cytokines are any of a group of proteins that function to control the survival, growth and differentiation of tissues and cells, and which have autocrine and paracrine activity.
	GO:0006955	immune response	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
	GO:0035556	intracellular signal transduction	The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
	GO:0045576	mast cell activation	The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors.
	GO:0045860	positive regulation of protein kinase activity	Any process that activates or increases the frequency, rate or extent of protein kinase activity.
	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0036398	TCR signalosome	A multi-protein complex containing at least the T-cell receptor complex and the LAT (linker for activation of T cells) scaffold protein. Also contains a variety of signaling proteins including co-receptors, kinases, phosphatases and adaptors such as CD8. Connects events on the plasma membrane to distal signaling cascades to ultimately modulate T cell biology.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0044853	plasma membrane raft	A membrane raft that is part of the plasma membrane.

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